Lates calcarifer (barramundi perch): 108889873
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Entry
108889873 CDS
T04895
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108889873
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108889873
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108889873
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108889873
mRNA cycle factors
Stress granule specific factors
108889873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
Dicer_dsRBD
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
108889873
NCBI-ProteinID:
XP_018542059
UniProt:
A0A4W6D775
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All DBs
Position
LG12:24538495..24546359
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AA seq
695 aa
AA seq
DB search
MSQLQFQCPTSPMPAAPAPLQLGQPQPGYSIPCASGTLPSESASQPIRSSALPAGSATPY
NTTTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLTLGDQHWEA
EGTSIKKAQHSAAASALAETTLPKPTVRTPRNTGKNPADGMTHTMELNALCMKLGKKPMY
KPIDPYPGMRPPNFNYNVRAPGPYQRSMQQYYYPFPPVGPMLYHMELSIGGQQFIGKGRT
RQLAKHEAAAKALKVLQKEPILQQLPVMNGEPEEENLNKSEISQVFEIALKRNLPVNFEV
LKEEGPPHMKSFVVRVTVGEFTGEGDGKSKKIAKKLAAAAVLRELKRLPHIPSVEKTLPR
IKKKTKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVT
VCGQSAEGMGPSKKVAKRNAAEKMLDLLGYKVPQPQPPKPALKTDEKTPVKKPGDGRKVT
FFEPGSVEEVALGSKEEDYRLPYLSHQQLPAGILPMVPEVAQAVGACQGSQAKDYSRAMP
NPGKATITAMIANELLYAGTSLTAETILKNKNNLNQLPHGPLTRPSEQLGYLASVQGLQV
EYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSELDQQSNERT
GNGPVSGCGKQEIEGDLHLKQANSSTLAQTLDGTV
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagctccagtttcagtgtccaactagccccatgcctgctgctcctgccccactg
cagctggggcagccacagcctggctacagcatcccctgtgcctcaggcaccttaccctcg
gagagcgccagccagcccatcaggagctctgctctccccgcgggctcagccactccctac
aataccaccacagtatctaacatggcaaaccctaaagagaagacccccatgtgtttggtg
aatgagttagcccgtttcaacaagatccaacctgagtataagctgctttgtgagcaagga
ccagctcactccaagattttctcagtgagactcacactgggagatcagcactgggaggca
gaggggaccagcatcaagaaagcccagcattccgctgctgcttctgccctcgctgagaca
acactccccaagcccaccgtgaggacgccccgcaacacaggcaagaacccagcagatggc
atgacacataccatggagttgaatgcactatgtatgaagcttggtaaaaagcctatgtat
aaacccatcgacccatacccggggatgaggccaccaaacttcaactacaatgtccgggct
ccagggccttaccagcgctctatgcaacagtactactacccatttcctccagtgggacca
atgttataccacatggagctttccatcggaggccagcagtttattggaaagggacgcacg
cggcagttagccaaacatgaagctgctgccaaggccctgaaagtgctgcagaaggagcca
atattgcaacagttgccagtgatgaacggagaaccagaggaggagaacctcaacaaatca
gaaataagtcaagtatttgaaattgcacttaaacgcaacttacctgtcaactttgaggtt
ttaaaggaagagggtcctccacacatgaagagttttgtcgtgcgtgttacagttggggag
ttcactggcgagggcgatggaaagagtaaaaagattgccaagaagctggcagcagcagcg
gtgcttagggagttgaagaggcttccccatatacccagtgtggaaaagacgctgccacgc
atcaaaaagaaaaccaaatctatcattaagctgcagaccagcccagagtatggtcagggt
atgaatcctatcagccgcttggctcagatccagcaggccaagaaagagaaggagccggag
tacagcatggtcacagagcgaggtttaccgcggcgtagagagtttgtcatgcaggtgacc
gtgtgtggccagtctgcagagggaatgggacccagcaagaaggtggccaagaggaacgca
gcagagaaaatgctggacctcttgggatataaagtgcctcagcctcagccccctaaaccg
gcactcaaaactgatgaaaagaccccagtgaaaaaacctggtgatgggcgcaaagtgacc
ttctttgagcctggctctgtagaggaggtggcattaggttccaaggaggaggactaccgg
ctgccttacctgagccaccagcagctgcctgcaggcatcctgcccatggtgcctgaggtg
gctcaagcagtcggggcctgccaaggatcccaggccaaggactacagtcgagctatgccc
aacccaggcaaagccacaatcactgccatgattgccaacgagctgctttacgcagggaca
tccctgaccgctgagactatcctaaagaacaaaaataacctgaaccaactgccccatgga
cccctcaccaggccttcagaacagctcggctatcttgcgtccgtgcagggcctgcaggtg
gaatacaaagattttcccaaaaacaataagaatgagtttgtgtcactgattaactgctcc
tcccagccaccactcatcagtcatgggattgggaaagatgtagagtcctgtcatgatatg
gctgcactgaatatactgaagttgctctcagagttggaccagcagtcaaatgaaaggaca
ggaaatggaccagtctctgggtgtggcaagcaggaaatcgaaggtgacttgcacctcaaa
caggctaactcaagcacattggcacagaccctggatggcactgtttag
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