Lates calcarifer (barramundi perch): 108889906
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Entry
108889906 CDS
T04895
Name
(RefSeq) low-density lipoprotein receptor-related protein 12 isoform X1
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108889906
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
108889906
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUB
Ldl_recept_a
Motif
Other DBs
NCBI-GeneID:
108889906
NCBI-ProteinID:
XP_018542114
UniProt:
A0A4W6DVX6
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Position
LG3:23338461..23345856
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AA seq
885 aa
AA seq
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MSPAGGNIRVIMALRSAYILYLFTLSGCIAASQRNDNVYVSGISNACSDMAELLRASSGI
ITTPGWPFQYPSRLNCSWNIRARPGDTITISFQDFDLQGSHRCSSDWMSISSYRSLDGLR
VCGSSLPPPYISAQDHVWIHFHSDDSLAGKGFRLSYITGKPEASSCDVDQFHCSNGKCIP
DWWRCNSMDECGDNSDEELCVDSPFSFQPCSLNQFPCLSRYTRIYTCLPHSLRCDGSIDC
QDLGDEIDCDVPTCGEWLRNFYGSFSSPNYPDFYPPGSNCTWLIDTGDHRKVILRFTDFK
LDGTGYGDYVKVYDGLEENPRRLLRVLTAFDSRAPVAVVSSSGQLRVHFYADKINAARGF
NVTYQVDGFCLPWEVPCGGNWGCFTEQQRCDGYWHCPNGRDELNCSSCQEDEFPCSRNGA
CYPRSDRCNYQNRCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDAQDDCGDGSDEESC
PVIVPTRVITAAVIGSLICGLLLVIALGCTCKLYSLRMFERRSFETQLSRVEAELLRREA
PPSYGQLIAQGLIPPVEDFPVCSGSQASVLENLRLAVRSQLGFTSLRLPSSSRHSNLWRR
LFTFSRSRRSGSLALVSADLEDSAGTGSTGSSGSDLLSPDSDDTDTEGERGRERGAGAVG
GPVAPLPHKTPPPAAVEAVVSVTTSAAPETPAPGRDRCRDQPREVLSPSSPITMAASNPD
PECHSNASELQAPPTSALHRLAQNLHRLARNLTRAGQNQQNQIWTNHSPLHQLETGRGGP
DAVEHRGSREEEEDVELLIPVSDSDSSSSLVSDVQQPLLEPHPSSTAGHAPRHHRGNGIR
GGRDGPCEHCGMVHTAQIPDICLEATGRRPARRYNFLNTDLLVRL
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgagcccggcaggagggaacatccgggtcattatggccctcagatcagcgtatatcctc
tacctgttcacactgtcagggtgcattgctgcctctcagaggaacgacaatgtctatgta
tcaggaatttctaatgcctgcagcgacatggccgagctcctcagggcgtccagtggtatc
atcaccactcctggttggccgttccagtatccgtccagactgaactgcagctggaacatc
agagctcgacctggagacaccatcaccatcagtttccaggactttgatctgcagggttct
caccgctgttcctcagactggatgtccatcagcagctacaggagtcttgatggactccgg
gtctgtgggtcctctctgccgccgccctacatctccgcccaggaccatgtctggatccac
ttccactctgatgacagtctggcagggaaaggcttcagactgtcctatatcaccggtaag
ccagaggcgtccagctgtgatgtggaccagttccactgctccaacgggaagtgcatcccg
gactggtggcgctgtaactccatggatgagtgtggagacaactcagacgaagagctgtgt
gtggactcccccttctcattccagccctgcagcctgaaccagttcccctgcctgtcccgc
tacactcgcatctacacctgcctgccacacagcctgcgctgcgacggcagcatcgactgc
caggacctcggtgatgagatcgactgtgacgttccgacctgtggagagtggctgaggaac
ttctacggctccttcagttctccaaattatcccgacttctacccaccaggaagtaactgc
acctggctcatcgacaccggagaccacaggaaggtcatcctgaggttcacagactttaaa
cttgatgggactgggtacggggactatgtgaaggtctacgacggtctggaggagaaccct
cgtcgtctgctccgggtcctgaccgccttcgactccagagcgccggtcgctgtggtgtcg
tcgtccggtcagctccgagttcacttctacgccgacaagatcaatgccgcccgaggcttc
aacgtcacctaccaggtggatgggttctgccttccctgggaggttccttgtggggggaac
tggggctgtttcactgagcagcagcgctgtgacgggtactggcactgtcccaacggtcgg
gacgagctgaactgttcttcgtgtcaggaggacgagttcccgtgttccaggaacggagcg
tgttaccctcgatcggaccgctgcaactaccagaaccgctgccccaatgggtcagacgag
aagaactgcttcttctgccagccgggaaacttccactgcaagaataaccgctgtgtgttt
gagtcgtgggtttgcgacgctcaggacgactgtggtgacggcagcgacgaggagagctgt
ccggtcattgtccccaccagagtcatcaccgctgccgtcatcggcagcctgatctgtggc
ctcctgctcgtcattgcccttggctgcacctgtaaactctactcgctgcgcatgtttgag
cgcaggtcttttgagacacagctgtccagagtggaagcggagctgctgaggagggaagcc
ccaccctcttatggtcagttgatcgcccagggactgatcccacctgtggaggatttccca
gtgtgctctgggagccaggcatccgtcctagaaaatctccgcctggctgttcgctctcag
ctcggcttcacctccctcagactcccgtcctccagtcgtcatagcaacctgtggcgccgg
ctcttcaccttctcacggtctcggcggtcgggttctttggctctggtctctgccgatctg
gaggacagcgccggcaccgggagcaccgggagttctggttcggacctgctgtctccggac
tcggatgatacggacacagagggtgagcgagggagggagcgaggcgcaggcgcggtgggc
gggcccgtcgcccccctcccccataaaactccgccccctgctgccgttgaggctgtagta
tccgtgacgacgtcagcagcccctgaaactccagcaccaggccgagatcgatgccgcgac
cagcccagagaggtcctgtccccctccagtcccatcaccatggcagcgtccaacccagac
cctgagtgtcacagcaacgcctcggagctccaggccccgcccacctccgcgctgcaccgt
ctggcccagaacctgcaccgtcttgccaggaacctgaccagagccggtcaaaaccagcag
aaccagatctggaccaatcacagcccgctccaccagctggagacaggaagaggcgggccc
gatgctgttgagcaccgcgggagcagagaagaagaagaagacgtggagctcctgatccct
gtgtccgactccgactcctcttcctcattggtcagcgacgtccaacaaccgctcctggag
ccacacccctcttccactgcaggccacgcccctcgtcatcacagaggaaacggcattcgc
ggagggcgggacggcccctgcgaacactgtgggatggtccacacggcgcagatccctgac
atctgtttggaggccacaggcagacgtcctgctcgtaggtacaacttcctgaacactgac
ctcctggtacgactgtaa
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