Lates calcarifer (barramundi perch): 108890117
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Entry
108890117 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit alpha-1
KO
K05637
laminin, alpha 1/2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108890117
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108890117
09142 Cell motility
04820 Cytoskeleton in muscle cells
108890117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_N
Laminin_B
Laminin_II
Laminin_G_3
Laminin_I
DUF745
CREPT
DUF948
Transcrip_act
Tropomyosin
Motif
Other DBs
NCBI-GeneID:
108890117
NCBI-ProteinID:
XP_050923358
LinkDB
All DBs
Position
Unknown
AA seq
3119 aa
AA seq
DB search
MKLLLLLLLMEQTAAQQRGLFPAILNLASNAVISSNATCGDPEPEVYCKLVEHVPGRRIK
NPHCPKCDANSVLSKERHPITNAIDGTNQWWQSPSIKNGRQFHWITITLDLKQIFQVAYI
IIKSANSPRPGNWILERSLDGVTFDPWQFYAISDSECLTRYNITPRLGPPTYKSDTEVIC
TSYYSRLNPLEHGEIHTSLINGRPSADDLTSDLLNFTSARYIRLRLQRIRTLNADLMTLS
VRDPRDIDPIVTRRYYYSIKDISVGGMCICYGHAQSCPLDPVTKKLQCVCEHNTCGENCN
ECCPGYHQQPWQPGTVSEGNTCEKCNCHNKAVDCFFNQTVSKLSLSLNSRGVRQGGGVCI
DCQQNTAGINCETCRDGYYRPAEVSPYSDSPCVECNCDLRGSKSSVCVRDDSQPGVSAGQ
CVCEEGFSGQQCNRCAFGYRDFPLCVRCECNLSGSVNTDPCSPCTCKENVMGAHCDLCKP
GFYNLQEKNQLGCTDCFCFGVSDVCESSTWSTAQVYHTDAWLRPSQSLHTPSVVHGNDLP
IPGNTSSGHTHQQVLSWVAPASFLGNKLVSFGGYLNYSVVYDVPLDNEDHSLPAHSDIII
EGNGQAFRLSPPLLLFLSPLAERSVAVAMVPQRFMDDRTGGHVTRDDLLTVLTDVTSLRV
RVHLNASADGPIRLSSVSLDIADSGSVSGVQAVAVETCECPWGYSGTSCEACLPGFYRVG
GVLFGGNCMQCECNDHATECDVNGACLGCSHNTTGPHCDQCLPGFYGDPTEGTADDCRLC
PCPLTEPSNSFSPTCVLESPGQVSCDQCQEGYTGNNCERCASGYYGNPQVVGGACVRCEC
NSNVDISEAGHCDTATGECLRCIGNTAGRHCEVCQAGYYGDAVHAKDCRECGCDVSGALS
SVCDVTTGQCSCRENVTGRTCDHCQVGFFGLRSGQGCRACGCSQSGSVSESCDEDGRCQC
VEGVGGNKCDHCSRGYYGFHGNGCTACTCDHTGGNCNPETGECICPTHTEGDTCDRCETG
YWGHDPTMGCKPCSCSAAGSSAPQCDLTNGQCRCREGFSGRSCDQCTPGYHGYPACSACG
CDMAGTEGKFCNTTLGVCNCRHGGVCVCKAGVSGRRCEECVSGWFGLSAENPDGCSQCFC
SGLSRDCEEQGGLSRVPIALAHPPPLLSVVSQSNLQGVVSGVYQQGGDTLLDTRQLNTSR
LTGPLYWRLPPQFEGKQLLSYGGLLSYIITFYAEDGSGLSNQEPQVLMRGGTLKKLVIYT
DMVAPSNGVRTQHDIRMTEVQLQRIMGNQRNRKSCLNWKQCIIKCVCVCVLQHKWKYFNS
VSEKAVSHADFLSVLSDIQYVIIKASYGTRLQQSRISNITMETAVEVELEQGSEVSRGVA
RLIESCICPPGYTGLSCQECAPGYFRQPQSELSSQSLKSMFVRPCVRCRCNNHSETCNTE
TGECQDCQHHTSGRSCESCAPGYYGNVSGSISDCSLCACPLRDNSFSPTCVSEGALGDFR
CTACQAGYEGRYCERCSVGYYGNPSLPGRRCSRCNCSGWGSLHPLCDALTGQCECKAGVK
GQSCDQCVERHVLQGGECVSCDDECTGVLLDDLDKLHNYFLSVNMTGVAMAPYRQLVVLE
NQTRDIKVFSKNSSIAFRLSRVEDELNHLTSDLSGLLQQIAGLSDHLEEVGVSTNSSLSQ
GALLLRSISSLQDNIQELQREAGLLNHTTEEELDSANQTHLLEGVGLMLETMRAVNLTAA
NMTANQELSLVSLPLSAAVSESHLHLLQVDFLSTRAVVDNRLRLVSTFSTVGMETLRSAH
THLNNATQQNAQAHILLDNTYTLLHQYQSLHLNLSTVRLSVDALMEESQLLLDDTVSLTE
ELTNSTTQVEVLDSQLDQWRPLLRKQVDGLVIGLKMTDALENVYRAESHAHLLQSHAHSL
HSSLSSVCNTSQNGSRLGQLNSDITEQVDSAQQAASIAHVSASLALNMSVQSEQPLSKEG
GAKLNSSSAVLDDSRRIRETAEDLQLHVSMATSRLGVVRESIRNSTLLLRQPIIELQSLT
NGSSASLPQAQLQAAAARSSLQAALQRLQRLRDQLQDSSSVVENTNNTVRETNELLTHTQ
TAANEAQRKLEEVEHRTERLMERIKPLSMLGETLSRNLSDIRELIDQARRQAASIKVAVQ
ADRDCVRSYRPQIQSSNFNTLSLILKTSTPKNLLFYLGSNTTVDYLAVEMHDGKVSLLWD
LGSGSSRLEFPGLDITNNRWTRINATRFGAHVSLSVHQLDSESAPLPAVTATSPGSSRVL
DVNRNTVIHIGGLGLHTQSPVALRSSTFQGCLGEASLNERNIGLWNYDSREGECGGCFSS
PQAEETSFHFDGSGFSLVQKSLRATSTSIVFLFKTLSPGGLLLYLASNNTRDFLSMELVE
GHIRLTFDLGSGALILTSNRKYNTGVWYKITLQRNKRKGYLSIMAADQSSEKEVLEAESP
GMASDLNRSDLDPIYIGGLPASRPIRRQVVSRSYVGCIKNVEIARSNFDLLRDAYGVRKG
CVLKAVRSVSVLSGGFVQITPLSFGQEAELLFSFSSNNQSGILLAAFSDGRSQRQHFLSV
HLVSGALEAEFGEVGGAIRRVTVMKPDGESFSDGKRHSVIITINRKSLSLQVDEDHGKSV
PLLPGGVSRLSPASFFIGGLPSGEESRLPIRLQDLSRWFRGCIQHLVVGGALVDLSGAVR
YEGAELDSCLLEARVGGAVLPDDQDVEPTPDPAHLPVAPPTHLSALTPGALTCVSEAEPS
FLPSAAQFGSSKHSHMTFIINPNTVRKSVLMRLSVRSWALDGLILLLSDSKHTDFIVLTL
TGGKLVMSADLGKGPASVTSSVAVNDGAWHAVSAEVSRRLVSISVDGSSPDSVPVKGNQL
DVDNRLYLGGLPDTHSTRRINVSSSFPGCLHSLSLNGAMLDLTEPASQHDVTSCFTKDQT
GSYFHGSGYAILMHDGYKVGSDVSVSLEFRTSLSEGVFLGISSAKVDAIGLEMINGQVVF
NVNNGAGRVSVRSIGQVLCDGRWHRLLARKTKHTLSLSIDGRSYSTPNPYPQSTSAETNN
PVYLGGYPAGVKQNCLSISSRFRGCLRNLQLIKSHLRHTLNLSSAHFLSGVTPNSCPVA
NT seq
9360 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgctgctgttgttgctgctgatggagcaaactgcagctcagcaaagaggtctg
tttccggccatcttgaatctggccagtaacgcagtgatcagcagtaacgccacctgtgga
gatccagaacctgaggtttactgtaaactcgttgaacacgtcccaggacgaagaatcaag
aaccctcactgtcccaaatgtgacgccaactctgtcctgtccaaagaacgccatccgatc
acaaacgccattgatggaaccaatcagtggtggcagagtccaagcatcaagaacggacga
cagtttcactggatcaccatcacactggacctcaaacagatttttcaggtcgcctacatc
atcatcaagtcagcaaactctcctcgcccaggtaactggatcctggagcgctctctggat
ggtgtgacctttgacccctggcagttttatgccatcagtgactcggagtgtttgactcgt
tacaacatcaccccgagactcggacctccgacctacaagagcgacacagaggtcatctgc
acgtcgtactactcaagactgaacccactggagcacggagagatccacacctctctgatc
aacggccgacccagtgctgacgatttgacctctgacctcctgaacttcacgtcagctcgt
tacatcagactgaggctccagcgaatcagaactctgaacgccgacctgatgacgctgagt
gtccgagaccctcgagacatcgaccccatcgtcacccggaggtattattactccatcaaa
gacatctctgtgggtgggatgtgtatctgttacggacacgctcaaagctgcccgctggac
cccgttaccaagaagctgcagtgtgtgtgtgaacacaatacctgtggagagaactgtaac
gaatgttgccccggataccaccagcagccatggcaaccaggaacggtctccgagggaaac
acctgtgagaagtgtaactgtcacaacaaagccgttgactgtttcttcaatcagaccgtc
tccaaactctctttgagtttaaactctcgcggcgttcgtcagggaggcggagtctgtatc
gactgtcagcagaacacggccggcatcaactgtgagacctgcagagacggatactacaga
cctgctgaggtttctccgtactcagattctccgtgtgttgagtgtaactgtgacctgaga
ggatcaaagtcttcagtctgcgtcagagatgactcacagccaggtgtgtctgcaggtcag
tgtgtgtgtgaggaggggttcagcggtcaacagtgcaatcgttgtgcgtttggatacaga
gattttcctctgtgcgttcgttgtgagtgtaacctgtcgggcagcgtcaacaccgacccc
tgcagcccctgcacctgcaaggagaacgtgatgggagctcactgtgacctgtgtaaacca
gggttctacaacctgcaagagaaaaatcagcttggctgcactgactgtttttgctttggt
gtgtctgacgtctgtgagagctccacctggtccacagctcaggtgtatcatacagacgct
tggctccgcccctctcagtccctccacacaccttctgtcgtccatggcaacgacctcccg
atccccggcaacacctcatctggccacacccaccaacaggtgctgtcgtgggtggcacct
gccagtttccttggcaacaagctggtgtctttcggaggttacctgaactactctgtggtt
tatgacgtcccattggacaatgaggaccactctctccccgcccactctgacatcatcatc
gagggtaacggccaggctttccgtctctctcctcccctcctcctcttcttgtctccgttg
gccgagcgctcagttgccgtggcgatggtcccacagcgattcatggatgatcggacgggt
ggtcatgtgacccgtgacgacctgctgacggtcctcaccgacgtgacatcactgagggtc
agagttcacctgaacgcctccgcagacgggccgatacgtctcagctctgtgtctctggac
atcgctgactctggatcagtctctggggttcaagcggttgccgtggagacgtgtgaatgt
ccatggggttacagtggcacttcctgtgaggcgtgtctcccaggtttctacagagtgggc
ggagtcttatttggcgggaactgtatgcagtgtgagtgtaacgatcacgccactgagtgt
gacgtcaacggagcttgtttgggttgttcccataacaccaccggtcctcactgtgatcag
tgtttacctggtttctatggcgacccgacagagggaacagcagacgactgccggctgtgt
ccatgtcctctgacggagccgtccaacagtttcagccccacctgtgtgctggagtcacct
ggtcaggtgtcatgtgaccagtgtcaggaaggatacacagggaataactgtgagaggtgt
gccagtggttactatggtaacccacaggtagtgggcggggcctgtgtccgctgtgagtgt
aacagtaatgtggacatcagcgaggcgggacactgcgacaccgccaccggggaatgtctg
cgttgcatcggcaacacggccgggagacactgtgaggtctgtcaggccggttactatgga
gacgccgtgcacgccaaagactgtcgggagtgtggctgtgatgtcagtggcgccctctcc
agtgtgtgtgatgtcacaacaggtcagtgttcatgcagagaaaacgtgactggacgcacc
tgtgaccactgccaggtggggttctttgggctgcggagtgggcagggctgccgagcatgt
ggctgcagccaatcaggatctgtgtctgagtcatgtgacgaggatggacggtgtcagtgt
gtggagggcgtgggcggaaacaaatgtgaccactgtagtcgtggttactatggtttccat
ggcaacggctgcacagcatgcacttgtgatcacacgggtgggaactgcaacccagagact
ggagagtgcatctgccccacccacacagagggggacacctgcgacaggtgtgagacaggt
tactggggtcacgacccaaccatgggctgcaagccatgcagctgcagcgcagcaggaagc
tccgcccctcagtgtgacctcaccaacggccaatgtcggtgcagggagggcttctctggc
aggtcatgtgaccaatgtacacctggttaccatggttacccagcatgctcagcgtgcggc
tgcgacatggcgggaacagaagggaagttctgcaacacaacgctgggagtgtgcaactgt
cgacacggtggagtgtgtgtgtgcaaggcaggtgtgtcaggtcggcgttgtgaggagtgt
gtctctggttggttcggtttgtcagctgagaatccagacggctgctctcagtgtttctgt
tcaggactgagccgagactgtgaagagcagggaggactgtccagggtccctatcgccctg
gctcaccccccccctctcctgtcagtggtcagtcagtctaacctgcagggtgtagtatct
ggagtttaccagcagggcggcgacacactgctcgacacccggcagctcaacaccagcaga
ctaaccggccccctctactggagactgcccccccagtttgaaggcaaacagctgctgtcg
tacggcggcctgctgtcttacatcatcaccttctacgctgaggacggttcaggactgtcc
aatcaggagcctcaggtgctgatgaggggcgggactctgaagaagctcgtcatatatacg
gacatggtcgcccccagcaacggcgtcaggacccagcatgacatcaggatgacagaggta
cagctgcaaagaatcatgggaaaccagagaaacaggaagtcttgtttaaactggaagcag
tgtattataaagtgtgtgtgtgtgtgtgtgttacagcacaaatggaagtattttaactct
gtgtcggagaaggcggtgagtcacgctgacttcctgtccgtcctcagtgacatccagtac
gtcatcatcaaggcttcatacgggaccagactgcagcagagcaggatctctaacatcacc
atggagacagcagtggaggtggagttagagcaggggtcagaggtcagcaggggcgtggcc
agactgattgagtcctgtatctgtccacctggatacaccgggctgtcctgtcaggagtgt
gctccaggttatttccgtcagcctcagtctgagttgtcgtctcagagtctgaagtcgatg
ttcgttcgtccgtgtgtgcgatgtcgctgcaacaaccacagtgagacctgcaacacagag
actggagagtgtcaggactgtcagcatcacaccagtgggcggagctgtgagtcgtgtgcc
ccagggtattatgggaatgtcagtggctccattagtgactgttcactatgtgcctgcccc
ctacgggacaacagtttcagtcccacctgtgtgtcagagggagcgcttggtgattttcgc
tgcaccgcctgtcaggcgggatacgaggggagatactgtgagaggtgttctgtcggttac
tacggtaacccctcgctgcctggcaggaggtgttcgcggtgtaactgtagcgggtggggc
tccctccacccactgtgtgacgcactgacgggacagtgtgagtgcaaggccggggtcaaa
ggtcagtcatgtgaccagtgcgtggagagacacgtcctgcagggaggagagtgtgtgtcc
tgtgatgacgagtgcaccggcgttctcctggacgacctcgataaactacacaactacttc
ctgtctgtcaacatgaccggtgttgccatggcaccataccgccagctggtggtgctggag
aaccagaccagagacataaaggtgttttcaaagaacagctccatcgctttccgtctgtct
agagtagaagacgagttaaatcacctgacctctgacctcagcggtttactgcagcagatc
gcaggtctgtctgatcacctggaggaagtgggcgtttccaccaacagcagcctctcccag
ggtgcactgctgctgaggagcatcagcagcctgcaagacaacattcaggagctgcagaga
gaggcggggcttctgaaccacaccacagaggaggagcttgactcagccaatcagacacat
ctgctggaaggggtggggcttatgttagaaaccatgagagctgtcaatctgacggccgcc
aacatgacagccaatcaagagctcagtctggtctctctacctctctctgcagccgtgtca
gagtctcacctccacctgctgcaggtggacttcctgtccaccagggcggtggttgataac
aggctccgcctcgtctccactttttccactgtcggcatggaaacgctgcgaagtgcacac
acacacctgaacaatgccacacaacaaaacgcacaagcacacatactgctggacaacaca
tacactctgctgcatcagtaccagtctctccacctgaacctgtccactgtccgtctctct
gtggacgctctgatggaggagagtcagctgctgctggacgacaccgtcagcctgacggag
gagttaacgaactccaccacacaggtggaggtgttggacagtcagctggatcagtggcgc
cccctgctgaggaaacaggtggatggtttggttatcggactgaagatgacggatgctctg
gagaatgtttaccgtgcagagagccacgcccacctgctgcagagccatgcccactccctg
cacagctctctgtcgtccgtatgtaatacgtctcagaacggcagccgattgggtcagctc
aacagtgacatcacagagcaagttgactccgcccagcaagcggcctcaatcgcccacgtc
tccgcctccctcgctctcaacatgagtgtccaatcagagcagccgctgtcaaaagagggc
ggagccaaactgaactccagctctgcagttttagacgacagtcgccgaatcagggagaca
gctgaagacctgcagctgcatgtctccatggcaaccagcagactgggcgtggtcagagag
agcatccggaactccaccctcctcctccgtcagccaatcatagagctgcagagcctcact
aacggctcatcggcctcgctgccacaggctcagctccaggctgcagcggcgcgctccagc
ctacaggcagcgctgcagcggctgcagagactcagagatcagctgcaggattcttcttct
gtggtggaaaacaccaacaacacagtgagagagacgaacgagctgctgactcacactcag
actgcagccaatgaggcgcagcgtaagctggaggaggtggagcatcgcacagagcgtctg
atggagcggataaagccgctgagcatgctgggagaaacactgagcaggaacctgtctgac
atcagagagctgatcgatcaggcccgaagacaggcggcatcgataaaggtggcggtgcag
gcggacagagactgtgtccggtcctacagacctcagatccagtccagtaacttcaacaca
ctgagtctgatcctgaagacatccactcctaaaaacctgctcttctacctgggtagcaac
accacggtggattacctggctgtagagatgcatgatgggaaggtatctctgctgtgggac
ctgggttcaggcagcagcaggttggagtttcctggacttgacatcaccaacaacaggtgg
accaggatcaacgctacacggtttggcgcccacgtctctctgtcggtccatcagctggac
tcagagtcggctccgttgccagcggtaacagcaacatcaccgggatcgtcccgagtttta
gacgtcaacagaaacacggtgatccacatcggaggactgggacttcacactcagagccct
gtggcgttgaggtcatccacctttcagggctgtctgggagaagcttcgctcaacgagaga
aacatcggactgtggaactatgacagcagagagggcgagtgtggaggctgcttcagcagt
cctcaggcggaagagacctccttccactttgatggatctggattctcattggtccaaaag
tctctgcgtgcgacctccacctccattgtgtttctgtttaagactctgtctccgggcgga
ttactgctctacctcgcctccaacaacaccagagacttcctgtccatggagctggtggag
gggcacattcgtctgacctttgacctcggctcaggcgctttgatcctgacctccaacagg
aagtacaacactggagtgtggtacaagatcacgctgcaaaggaacaaacgcaaaggttac
ctgtccatcatggctgctgaccaatcgtcagagaaggaggtgctggaggcagagtctccc
ggcatggcttctgacctgaaccgctccgacctcgaccccatctacatcggaggacttcct
gcctccagacccatcaggcgacaggtggtgtcgaggtcgtacgttggctgtataaagaac
gtggagattgctcggtccaactttgacctgctgagagacgcatatggagtcaggaagggc
tgcgtactcaaggcggtgcgcagcgtgtccgtcctgtccggagggttcgttcagatcact
cctctgtccttcggtcaggaggcagagcttctcttctccttctcctccaacaaccaatca
ggaatcctgctggctgccttcagtgacggccgctcacagcgacagcacttcctgtcagta
cacctggtctcaggtgcattggaggcggagtttggtgaggtgggtggagccatacggagg
gtgacggtaatgaaacctgacggagaatccttcagtgacggaaagagacactctgtgatc
atcaccatcaacaggaagtctctgtccctgcaggtagacgaggatcacgggaagtccgtc
cctctgttgccaggcggagtttctcgtctgtctccagcctccttcttcattggtgggctg
ccctcaggggaggagtcccgtctaccaatcagattacaggatttatccaggtggttcaga
ggctgcatccaacacctggtggtgggcggagcacttgtcgacctatcaggagctgtgagg
tatgagggggcggagcttgacagctgcctactggaggcgagggttggcggggcagtgctt
cctgatgaccaggatgtagaaccaactcctgaccccgctcacctaccagtagcccctccc
acacacctgagcgccctgacacctggggcgctaacgtgtgtgtcggaggcagagccaagt
ttcctgccatcagcagctcagtttggttcgtccaaacacagtcacatgaccttcatcatc
aaccccaacactgtcaggaagagcgtcttgatgaggttgtcggttcgaagttgggctctg
gacggactcatcctcctcctctctgactccaaacacactgacttcattgtcctcacactg
acgggagggaaactggtgatgtcagctgacctggggaaaggccccgcgtccgtcacctca
tctgtcgccgttaacgatggagcctggcacgctgtgagcgccgaggtcagccggaggttg
gtgtcgatctcagttgacggttcgagtccagattctgtgccggttaaaggaaaccagctg
gatgtggacaacagactttacctgggaggattacctgacacacactccaccaggaggatc
aacgtgagcagcagttttccaggttgtcttcactctctcagtctgaatggagccatgttg
gatctgactgaacccgcctcacagcatgatgtcacttcctgtttcaccaaagaccaaaca
ggaagttattttcacggcagcggctacgccatcctcatgcatgatgggtataaagtcggc
tcggacgtgtcggtgtctctggagtttcgaaccagcctatcagagggagtgttcctggga
atcagcagtgcaaaggttgacgccatcggactggaaatgatcaatggacaggtggttttt
aacgtgaataacggggcggggcgagtgtcagtacgttcgattggtcaggtgttgtgtgat
ggacggtggcaccgcctcctggccagaaaaaccaaacacaccctgagtctgagcatagac
gggcggagttacagcacccccaacccctacccacaatccacctctgctgagaccaacaac
cctgtctacctcggaggatatccagctggagttaaacagaactgcctgtcaatcagctcc
aggttcagaggttgtctgaggaacctgcagctcattaagtctcacctgagacacactctc
aacctgagctccgcccacttcctgtcaggtgtcacacctaactcgtgtcctgttgcttag
DBGET
integrated database retrieval system
