Lates calcarifer (barramundi perch): 108890165
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Entry
108890165 CDS
T04895
Name
(RefSeq) periodic tryptophan protein 1 homolog
KO
K14791
periodic tryptophan protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcf03009
]
108890165
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
90S particles
Other 90S particles
108890165
Pre-60S particles
Other pre-60S particles
108890165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_CAF1B_HIR1
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WD_LRWD1
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_RIG_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
108890165
NCBI-ProteinID:
XP_018542506
UniProt:
A0AAJ7V9Q9
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All DBs
Position
LG18:5043170..5048428
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AA seq
494 aa
AA seq
DB search
MSSQITCVGWVRRGVAKETPDKVELSQEELQRIITEAKEELGELAAEEEEEDDEGMAPEQ
NPGNATADVAEVPNDENEGGKDEDDDLAEYGLDKYDEEDTVTANLGDSLAGLTVFSCNEE
DPYITIKDTDQYEREDFQIKPGDNLILAGRAEKDCCNLEIYVYNSEEDSLYVHHDILLPA
YPLCVEWLNFDPSPGEGSVNYAAVGNMTPQIDVWDLDIVDCLEPAFSLGNKKASKKKKKG
KKGAAAEPVEGHTDAVLDLSWNKLARNVLASGSADDTVILWDLSQGKPATTLRKHTDKVF
RLISFHPFEAQTLISGSYDKTAILYDCRSPDSNYRTWRFSGQVERLVWNHFSPCNFLAST
EDGFVYCLDARSDKPVFTLRAHDEEVSGLALSSQVKGCLVTSSADKHVKVWDILGNKPNL
VHSRDMKMGVLFCASCCPDQPFVYAFGGQKDGLRVWDISDIAAVAEVFGSRERLVVNTGS
QASSSAATAEMDVS
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccagatcacctgtgtcgggtgggtgaggcgaggcgttgccaaggaaacgccg
gacaaagttgagttgagccaagaggagcttcagcgcatcattactgaagcaaaggaggag
ctgggggaactagcagctgaggaggaagaagaggatgatgaaggtatggctccagagcag
aatcctggtaatgctacagctgatgttgctgaagttccaaatgatgagaatgaaggagga
aaggacgaagatgacgatctggcggagtacggcctggataaatatgacgaagaagataca
gtgacggctaatcttggtgacagtctggctgggctcactgtgttcagctgtaatgaggag
gatccttacatcaccatcaaagatacagaccaatatgagcgagaagacttccaaatcaag
cctggtgacaatctcatcctggctggcagggcagagaaggattgctgcaacttggagatc
tatgtttataactcagaggaggactctctgtatgttcatcatgatattctgctgccagct
tacccactgtgtgtggagtggctaaactttgacccaagccccggagaaggatcagtcaac
tacgccgctgtgggcaacatgacgcctcagatagacgtgtgggacctggatatagtggac
tgtttagagccagccttttccctggggaacaaaaaggcctcaaagaagaaaaagaagggc
aagaagggggcagcagcagagcctgtcgaggggcacacagacgcagtgctggatttatcc
tggaacaaactggccaggaacgtgttggccagtggatcagcagatgacactgttatcttg
tgggatctgtctcaaggcaaaccagccacaactctgcgaaaacacactgacaaggtgttc
agactgatatcattccacccatttgaggcacagactctgatatctggatcatacgataag
acagccatcctgtacgactgccgcagtccagacagcaactatcgaacctggaggtttagc
ggccaagtggagcgtctggtctggaaccacttttcaccctgcaacttcctggccagcaca
gaagacggctttgtgtactgtctggacgcacggtctgataaacctgttttcactctgagg
gcacacgatgaagaagtgtcaggtttggccctaagcagccaggttaaaggatgcctggtc
acctcctcagccgacaaacacgttaaagtttgggacattttgggtaacaaacccaacctg
gttcactcgcgggatatgaaaatgggagtgctgttctgtgcctcatgttgtcctgatcag
cccttcgtctacgcctttgggggacagaaagatggcttgagggtttgggatataagtgac
attgcagcagtggccgaggtgtttggtagtcgagagcgtttagtggtgaacacaggatca
caggcatccagcagtgcagccacagcagagatggacgtctcttag
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