Lates calcarifer (barramundi perch): 108890331
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Entry
108890331 CDS
T04895
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108890331
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108890331
Factors involved in mRNA localization
Other mRNA localization factors
108890331
mRNA cycle factors
Stress granule specific factors
108890331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
Tudor_FRX1
KH_1
Agenet
FXR_C3
Tudor_2
Motif
Other DBs
NCBI-GeneID:
108890331
NCBI-ProteinID:
XP_018542713
LinkDB
All DBs
Position
LG17:complement(23560570..23572320)
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AA seq
694 aa
AA seq
DB search
MEELAVEVRGSNGAYYKGFVKDIHDDSLTIAFENNWQPERQVPFSDVRLPPPADAKKEIG
EGEEVEILSRANEQEPCGWWLAKVRMMKGDFYVIEYAACDATYNEIVTFERLRPVNTNKA
ITKNSFHKCNVPVPQDLQEACQNENAHKDFKKAVGACRISYCPETSQLVIVSTNETTVKR
VSLLSDMHLRSLRTKLLLMSRNQEATKHLESSRQLVSSFQEEFMVRPDLMGLAIGSHGSN
IQQARKVPGVTAIELDEETGTFRIYGETAEAVKKARSYLEFLEDSVQVPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNDTKQPRQEGMVPFTFVGTKESIGNVQVLLEYHISYLNE
VEQLRLERMQIDEQLRQITQGHRPVDRERGERGERGGGYNPDSSANASSSSLHGSRSYNS
RGRGRRGHSYSTGYGTNSEQSNASETDSERRDELSDWSLAGEDQDRERERGPRPPRDGRR
RLGPGRGRGGPGGRGRGGRGYNNSSAAGPHDHEDNHAYAVLETNTETDQTADTDASESNL
PANRRRRSRRRRTDEDATLMDGMSESDNASMSENGIDDSEAKPQRRNRSRRRRIRLPEER
QPVTVADYISRAESQSRQMTTKDSKKNNVVGQVDAIAEHSPQSVPATTNGSSNNNAGDSE
GGNTTRAPRSSTERPAKVSYKEDSNPQPVVNGLS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggaagaactggcggtggaggtccgtggctccaacggggcttattacaagggctttgtc
aaagatatccacgatgactctctcaccattgcctttgagaataattggcagccagaacgc
caggtgcccttcagtgatgtcaggttgccaccgcccgctgacgccaagaaggagattggg
gagggtgaggaggtggagatcctctctagagccaatgaacaggagccttgtggttggtgg
ctggctaaagttcgcatgatgaagggagatttctatgtgattgagtatgcagcctgtgac
gccacctacaacgagattgtgacctttgagcgtctgcgtccagtcaacaccaacaaggcc
attaccaagaactcctttcacaagtgcaatgtccctgttcctcaggatctacaagaagcg
tgccagaatgagaatgcccataaggacttcaaaaaagccgtcggagcctgtcgcatctca
tactgccctgagaccagccaactagtgattgtgtccaccaatgagacgacagtgaagcgc
gtgtctttgctgagtgacatgcacctgcgcagcctcaggaccaagctgttgctaatgtct
cgcaaccaggaggctacaaaacacctggagagctctaggcagctggtgtcatcctttcag
gaggagtttatggtgagacccgatctgatgggcctggccattggcagtcatggcagcaac
atccagcaggctcgtaaagtcccaggtgtcactgccattgagctggatgaggagactggc
actttcaggatttatggagagacagcagaggcagtgaagaaggccaggagctaccttgag
tttctggaggattctgtccaggtgccaaggaaccttgttggcaaagtgattggtaagaat
ggcaaagtcatccaggagattgtggacaagtctggcgtggtgagagtcaggatagaagga
gacaatgacaccaagcagccccgacaggaaggaatggtccccttcacctttgttggcact
aaggagagtattggcaatgttcaagtcttgctggagtaccacatctcttacctcaatgag
gttgagcagcttcgtctggagcggatgcagattgatgaacagttacgccagattacccag
ggtcaccgaccagttgacagggagagaggggagaggggggagaggggaggagggtataat
ccagacagcagtgccaatgcctcctcatcctccttacatggcagtcgttcctacaacagt
cgtgggcgtggacgcagaggccacagctacagcactggatatggtaccaactcagagcag
tccaatgcctctgagactgattcagagcgcagggatgaactcagtgactggtccctggcc
ggagaggaccaggacagggagagagagagaggcccacggccacctagagatggtcgcagg
aggctagggcctggcagaggccgtggagggcctggaggaaggggaagaggaggaagagga
tacaacaacagttctgcggcagggcctcatgaccacgaggataaccatgcctatgcagtc
ctggagacaaacacggagacagaccagacggccgatacagatgctagcgagtccaacttg
cctgccaaccgccgcagaaggtctcggcgacgcagaacagatgaggacgccacactgatg
gatggcatgagcgagtcagacaatgcctcaatgagtgaaaatggaatagatgactcggag
gctaaacctcagcgtcgtaaccgtagtcgacgtcgccgcattcgcctgcctgaggagagg
cagccagtgactgtggctgactacatatccagggctgaatctcagagcagacagatgacc
accaaggattccaagaaaaacaacgttgtgggtcaggtggatgccatcgctgagcacagc
ccgcagtctgtcccggcaaccaccaatggttccagcaacaacaacgctggcgacagtgag
ggcggcaataccaccagagctcccaggtcttccactgagaggcctgccaaagtctcctac
aaggaggactctaacccacagcctgttgttaacggcctctcctag
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