Lates calcarifer (barramundi perch): 108890333
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Entry
108890333 CDS
T04895
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108890333
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108890333
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
108890333
NCBI-ProteinID:
XP_018542716
UniProt:
A0A4W6BVI3
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Position
LG17:complement(23435355..23437665)
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AA seq
322 aa
AA seq
DB search
MYNMMETELKPPAPQTNTGGTGNTNTSGTGTNQKNSPERVKRPMNAFMVWSRGQRRKMAQ
ENPKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMK
KDKYTLPGGLLAPGGNGMGTGVGVGVGAGLGGGVNQRMDSYAAHMNGWTNGGYGMMQDQL
SYQHPGLNAHNPSQMQSMHRYDMSALQYNTMTSSQSYMNGSPTYSMSYSQQTTPGMTALG
SMGPSSVVKSESSSSSPPVVTSSSHRAAPGCQSGDLRDMISMYLPGAEVSEQTAQTRLHM
SGHYQSTVPGTTINGTLPLTHM
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggagactgaactgaagcccccagctccccagaccaacacggggggc
acgggcaacaccaacacgtccggcactggcaccaaccagaaaaacagtccggagcgggtt
aagagacccatgaacgcgttcatggtgtggtcccgaggccagaggaggaagatggcccaa
gaaaatcccaaaatgcacaactcggagataagcaagagactgggcgcggagtggaaactt
ctgtcggagagcgagaagagacctttcatcgacgaagccaagaggctgcgggccctgcac
atgaaggagcatccggattacaaataccggccccggcggaaaaccaagaccctcatgaag
aaggacaagtacaccttgcccggcgggctgctggctccgggaggaaacggtatgggaact
ggggtcggtgtaggggtgggagccgggctgggcggtggggtgaaccagcgaatggacagc
tatgcggcgcacatgaacggctggaccaacgggggctacggtatgatgcaggaccagctg
agctaccagcaccccgggctgaacgcgcacaacccgagccagatgcagtccatgcaccgc
tacgacatgagtgccctgcagtacaacaccatgaccagctcccagagttacatgaacggc
tccccgacatactccatgtcttattcccagcaaaccacgccggggatgaccgccttgggc
tccatggggccctcctcggtggtgaagtccgagtccagcagctccagcccgcccgtcgtc
acctcgtcgtcccaccgggccgccccgggctgccaaagcggagacctgagggacatgatc
agcatgtacctgcccggggcggaggtcagcgagcagaccgcccagaccaggctacacatg
tccgggcactaccagagcaccgtgcccgggacgacgatcaacggcacgctgccgttaaca
cacatgtaa
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