Lates calcarifer (barramundi perch): 108890372
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Entry
108890372 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: vitronectin a
KO
K06251
vitronectin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108890372
04518 Integrin signaling
108890372
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108890372
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108890372
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108890372
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108890372
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108890372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hemopexin
Somatomedin_B
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
108890372
NCBI-ProteinID:
XP_018542750
UniProt:
A0AAJ7VA10
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Position
LG21:10321473..10326215
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AA seq
593 aa
AA seq
DB search
MFPMIGSTRSVITYSHSVLSHSRGNMGLRAVLLLALLAETFAADESCMGRCENGFDSQRK
CQCDSMCKYYQSCCSDFEATCGMMTRGDTFVFAEDDDELFEGTTPPPRTPAESFTRGARQ
PEPTEQTVSDFDRRPQQHPETTLEMVKPSRQRVPFRQMTPISPPPTESVPFTTKPPGMDA
AAETTTVPITTATTEAPDPDAEVCSGRSFDSFMQLKNGSIYAFRGVYVFELDQKSVLPGY
PKLIKDVWGIDGPVDAAFTRVNCQGKTYIFKGNQYWRFDNGVLDDDYPRDISVGFDKIPD
HVDAAFALPAPGHHGREKVYFFKGDQYYTYEFLHQPSHEECIRMSERSPSTLFRRYTDIY
YNNYEHFFSKLFSDLPQHHDKHHFINKDWKGLKSPVNAAMAGRIYVTSRSPPPPPPPPPP
PPPPPPRRNDYRFDQQWGQQQGQQWNQQYGQQWGRRRQSRSPFWGSMAEQGMNMGQAFAE
RGMEMGLRLAEKRMEMEERLGRDWDRRWDQDWDQDRRRDRYRQNNRGNYDSRDDGSYWEM
QRSLPIQSVYFFKGDKYYRVDLSTKRVDPAMPPYPRSIARYWLGCSDTTGAEK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtttccaatgattgggagcacacggtccgtcattacttattctcattctgtcctctca
cacagcagaggcaacatggggctgcgggccgtcctgctgctcgctctgctcgcagagact
ttcgctgcagacgagtcctgtatgggtcgctgtgagaatggctttgactctcagaggaag
tgccagtgtgactccatgtgcaagtattaccagagctgctgctctgactttgaggccacc
tgtggcatgatgactcgtggggacacctttgtgtttgcagaggacgatgacgagctgttt
gaaggcaccactccacctcctcgaactccagcggagtctttcacccgtggagctcgtcag
ccggagcccactgagcagaccgtctcagactttgaccgcaggccccagcagcatccagag
accacactggaaatggtcaaaccatctcggcagagagtccccttcagacagatgacacct
atttcacccccacctacagagagcgtccccttcacaaccaaaccccctgggatggatgca
gcagctgagacgaccaccgtccccatcaccactgccaccacggaagcccctgacccggat
gctgaggtctgcagcgggaggtcctttgactcttttatgcagctaaaaaatggctctata
tatgccttcagaggggtgtatgtttttgaactggaccagaagtcggtcctccctggttat
ccaaagctcatcaaggacgtgtggggtatcgacgggccagtcgatgcagctttcacccgt
gtcaactgtcaagggaagacctacatcttcaagggaaaccagtactggaggttcgataac
ggcgtactggatgacgactatcctcgagatatcagcgtgggctttgacaaaattcctgat
cacgtggatgcagcgtttgccctccctgcccctggtcaccacggaagagagaaagtctat
tttttcaaaggggatcagtactacacgtacgagtttttgcaccagccgtctcatgaggag
tgcatccgcatgtctgagaggtctccatccacactgttcagacgctacactgacatatac
tacaacaactatgaacactttttcagcaagctcttctctgacttgcctcagcatcacgac
aaacaccacttcattaacaaagactggaagggtctcaagtctccagtgaatgctgccatg
gcgggcaggatctatgtcacttccaggagtccaccgccgccgccgccgccaccgccacca
ccgccaccaccgccaccacgccgcaacgactacaggttcgaccagcagtggggtcagcag
cagggtcaacagtggaaccagcagtacgggcagcagtggggtcggaggaggcaaagccgc
tcacccttctggggctccatggccgagcaggggatgaacatgggtcaggccttcgctgag
aggggcatggagatgggtctgaggctggctgagaagaggatggagatggaggagaggctc
ggacgggactgggacagacggtgggatcaagactgggaccaggacaggaggagagatcga
taccgccagaacaacagaggcaactacgactctagggacgacgggtcgtactgggagatg
cagaggagtctgcccattcagagcgtctacttcttcaaaggagataaatactacagagtg
gacctcagtaccaagagagtcgaccccgccatgcctccatatcccagatccatcgctagg
tactggctcggctgctcagacaccaccggggcagagaagtag
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