Lates calcarifer (barramundi perch): 108890401
Help
Entry
108890401 CDS
T04895
Symbol
valopa
Name
(RefSeq) vertebrate ancient long opsin a
KO
K04256
c-opsin
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108890401 (valopa)
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
lcf04030
]
108890401 (valopa)
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108890401 (valopa)
G protein-coupled receptors [BR:
lcf04030
]
Rhodopsin family
Vision
Opsin
108890401 (valopa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srsx
7TM_GPCR_Srw
7TM_GPCR_Srv
7tm_4
Motif
Other DBs
NCBI-GeneID:
108890401
NCBI-ProteinID:
XP_018542780
UniProt:
A0AAJ7PZL2
LinkDB
All DBs
Position
LG16_LG22:791070..804744
Genome browser
AA seq
387 aa
AA seq
DB search
MDTLSLSVNAVSYTVAAELPATDDPFNGPIKNIAPWNFTILAVLMFVVTSLSLSENFLVM
FVTFKFKQLRQPLNYIIVNLAIADFLVSLTGGLISFLTNARGYFFLGRWACTLEGFAVTF
FGIVALWSLAVLSFERFFVICRPLGNIRLQAKHAVLGLLFVWTFSFIWTFPPVLGWNRYT
VSKIGTTCEPDWYSTNMMDHSYIITFFATCFILPLGVIFFCYGKLLRKLRKVSHGRLATA
RKPERQVTRMVVVMIIAFMVGWTPYAVFSILVTAHPTIELDPRLASIPAFFSKTAAVYNP
IIYVFMNKQFRKCLIQLFTGMGTIPDSNLNQTSERPGITVESQTGEMSAIAARIPVGGTA
SPRSDDSPTDCGSFAQLPIPENKVCPM
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggatactttaagcctgtcggtgaacgcggtttcctacacggtggcggctgaactcccc
gccactgatgatccctttaacggacccattaagaacatcgcgccgtggaacttcaccatc
ctggccgtgctcatgtttgtggtcacctctctgtctctgagcgaaaacttcctggtcatg
ttcgtcaccttcaagttcaaacagctcagacagcccctcaactacatcatagtgaacctg
gccatcgcagactttctggtctctctcaccggtggactaataagtttcctgacaaacgcc
agaggttatttcttcctggggaggtgggcttgcaccctggaggggttcgctgtgactttc
ttcggtatcgtggccctgtggtccctggctgttctgtccttcgagcggttcttcgtgatc
tgccggcctctagggaacatccggctgcaggcgaagcatgcggtcctgggtctgctgttc
gtctggaccttctccttcatctggaccttccctccggtgctgggctggaacagatacacc
gtgagcaagattggaaccacctgtgaacccgactggtattcaacaaacatgatggatcac
agctacatcatcactttcttcgccacctgcttcattctccctctcggagtgattttcttc
tgctatggaaaactcctccggaagctcaggaaggtgtctcatggtcgtctggccaccgcc
aggaagccagagcggcaggtgacccgtatggtggtggtcatgataattgcattcatggtg
ggctggacgccgtacgcagtcttctccatactggtcacagctcatccaaccattgaactc
gatcccaggctggcgtccatccccgccttcttttccaagacagccgctgtctacaaccca
atcatctacgtcttcatgaacaaacagttcaggaagtgcctaatccaactcttcaccggc
atggggacgataccggacagcaacctgaaccagacctcagagcgacctggaattactgta
gagagtcaaacgggggaaatgtcagccattgcagcccggatccctgtgggtggcactgcg
tcacccaggtctgatgattctccgaccgactgcggctcgtttgctcagctgcccatccca
gagaacaaagtgtgtccgatgtag
DBGET
integrated database retrieval system
