Lates calcarifer (barramundi perch): 108890403
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Entry
108890403 CDS
T04895
Name
(RefSeq) DDB1- and CUL4-associated factor 7
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108890403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108890403
03036 Chromosome and associated proteins [BR:
lcf03036
]
108890403
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108890403
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
108890403
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_EIPR1
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_WDR3_1st
WD40
Beta-prop_Aladin
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
MIOS_WD40
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_Gbeta
WD40_RFWD3
EIF3I
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR41
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_WDR19_1st
Reductase_C
Motif
Other DBs
NCBI-GeneID:
108890403
NCBI-ProteinID:
XP_018542783
UniProt:
A0A4W6CDV9
LinkDB
All DBs
Position
LG23:8949865..8957013
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AA seq
342 aa
AA seq
DB search
MSLHGKRKEIYKYEAPWTVYAMNWTVRPDKRFRLALGSFVEEYNNKVQIVGLEEDSSEFV
CRNTFDHPYPTTKIMWIPDTKGAYPDLLATSGDYLRIWRVSDTETRLECLLNNNKNSDFC
APLTSFDWNEVDPNLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDI
SFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATM
AMDSMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMP
RAIEDPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtcactacacggtaagcgtaaagaaatctacaaatacgaggcaccgtggacggtttac
gccatgaactggaccgtccgaccggacaaacgcttccgcctggcgctcggtagctttgtg
gaggagtacaataacaaggttcagatagtcggtctggaggaggacagctcagagttcgtg
tgccgaaacactttcgaccatccctaccccaccaccaagatcatgtggattcctgacacc
aaaggagcgtaccctgacctgctggccaccagcggagactacctgagaatttggagggtc
agtgatacagagacccgcctggagtgcctgctgaacaataacaagaactctgacttctgt
gcaccgctcacatccttcgactggaacgaggtggatccaaacttgttaggtacttccagt
attgacaccacctgtacgatctggggactggagactggacaggtgctgggaagggtcaat
ttagtgtcaggtcatgtcaagacgcagctaatcgcccatgacaaagaggtgtacgacatc
tctttcagccgtgcaggtggcggcagggacatgtttgcctcggttggagcagacggctca
gtccgcatgtttgacctccgtcacctggaacacagcactatcatctatgaggacccccag
caccacccactgctccgactctgctggaacaaacaggaccccaactacctggccaccatg
gcgatggacagcatggaggtggtgatcttagatgtacgtgtgccctgtactccagtggcc
agactcaacaaccacagggcctgtgtcaatggcatcgcctgggcgccacattcctcctgt
cacatctgtacagcagcggacgaccaccaggctctaatctgggacatccagcagatgccg
cgggccattgaggaccctatactggcctacacagccgagggagagatcaataacgtacag
tgggcctccacccagcctgattggatcgctatctgctacaacaactgcctggaaatcctc
agagtctga
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