Lates calcarifer (barramundi perch): 108890411
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Entry
108890411 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-M-like
KO
K06461
integrin alpha M
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
lcf04514
Cell adhesion molecules
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108890411
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108890411
09142 Cell motility
04810 Regulation of actin cytoskeleton
108890411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108890411
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108890411
04515 Cell adhesion molecules [BR:
lcf04515
]
108890411
04090 CD molecules [BR:
lcf04090
]
108890411
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108890411
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
108890411
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108890411
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin alpha subunits
108890411
CD molecules [BR:
lcf04090
]
Proteins
108890411
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
108890411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
ITGAX-like_Ig_3
FG-GAP
Integrin_A_Ig_2
VWA_2
Integrin_A_Ig_1
FG-GAP_3
YidB
Motif
Other DBs
NCBI-GeneID:
108890411
NCBI-ProteinID:
XP_050922199
UniProt:
A0AAJ8DKJ3
LinkDB
All DBs
Position
LG23:8787974..8800381
Genome browser
AA seq
1166 aa
AA seq
DB search
MDWMIITTLFLSVLNIALCFNVDPVAWKYWSTTAAGFGYQVVQRQSDLLVSAPLEQYSQD
GRGQIYKCSLGTCQNLQVQVPNFAVNMSLGLTMIVDPTTQNTMVCGPTIPKDCRSITMYN
GVCFQIDRSDRLGPPVPSSLQECRTEADIAFLLDGSGSVSSQDFQTMKTFVKNLVRSFVG
KGTQFAVAQYSNSTHIHYYFDDFFTSGNWESNIDYINQMRGGTYTAKAIKSVVNNVFTSE
RGSRSNVKRILIVITDGESNDPQELPNAANLAESKKIVRFTIGVGAAFSKPKAKKELDTI
ASYPSTNHVFQVQNFNALDAIRQNLQDKIFSIEGSQSSGESLKMEMAQEGFSAAYIPGGV
QTAIVGANQWKGGYLKYTSRGQKQSSYEPTSMEPDSYLGYSMAVGKTKEGTLTIVGAPRY
QHRGIVMGVQENERSQTIDPHPWQSQTGEYFGAEVCAMDVDRDSYTDLILISAPMYTDTD
REGRVYVCSLVRLNVECHFESPIVLRGGVSDRGRFGSSLAVLPDLNADGLSDLAVGAPLE
NDGQGSIYIFLGEGGRTVRSTYSQRIPASEVKSGLKFFGISISQSSFDQSVDSLPDLVVG
SKGTVVLLRSKPIVMVEVTVSYSPKEIPSQNNDCTNALENTAEICFTMSRVSTVNTARAT
IRYDFTLDATRKVPNNRAYITDKQREKTESLAINLGQRQCSRVKFFIDACPEDALNSLSN
ELRFTFDGVLSDTNLRPSLAQDAKTTAIYPIGFEINCGTDNKCVDNLKVDFNFTSSSVVK
VGIDELLDVTVSVENREENSYNSRVILTYPAELSYRKFTSLQGRIECNSVDSEDGLSRGK
TECTIDKPIFKSRAKAFFTVSYGIETNSQLERRIFVTANATSGNQYQSPSSELYKKEWID
VKYSIFVSFESTLSYTNFTFGKNNLQKPIQQTIVVTNDIRALNFTVVIKVPVKLGDKDIW
VDSNSLQIPDCQRDRDDEPNVTDFVAQIQKNKVVDCSVAKCRVFKCTRFMGRSERKNYII
SANLSSGWIEQIGFKSAKFLLTSTASLEYDSNQFIFFSTGSNNNPPIRKIEAEIEVYSEA
DFTKGNVGGTLGGTLGGTLGRTLGGILGGMLIGLALLAALTAGLYKAGFFKSKYKEMIKK
DAGERPVSGSDAATPEQHELVEFTSH
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggactggatgattattactacactattcttgtcagtgctaaatattgcactttgtttc
aatgtcgatcctgtggcttggaagtactggagtaccacagctgcaggttttggctaccaa
gtggtgcaaagacagtcagatttgcttgtcagtgctcccctggaacagtattcacaggat
ggaagggggcaaatatataagtgttcccttggaacctgccaaaatctacaagttcaagtg
ccaaattttgcagtcaatatgtcccttggtttgacaatgatagttgaccccaccacacaa
aacactatggtctgtggcccaaccatccctaaggattgcagaagtatcaccatgtacaac
ggtgtgtgctttcagatagaccggtctgatcgtcttggacctccagtgccttcttcactt
caagagtgtcgaactgaagcagacattgcatttctgttggacggttcaggcagcgtatcc
agtcaagactttcaaacaatgaagacttttgtgaaaaatctggtccgctcgttcgtggga
aaaggcacacagtttgctgtcgctcagtattctaattcaactcatatccactattacttt
gatgactttttcacatccggaaactgggagtctaacattgattacataaatcaaatgagg
gggggaacttacacagctaaggccatcaaatccgtggtcaacaatgttttcacatcagaa
agaggttccagatcaaatgtgaagaggatcctgatagtcattactgatggagaatctaat
gaccctcaagaattaccaaatgcagcgaacttagctgagagtaaaaagattgttcgattt
actattggggtgggggctgcattcagcaaacccaaagcaaaaaaggaactggataccatt
gcatcttatccctcgacaaatcatgtgtttcaagtacagaactttaacgcacttgacgca
ataagacagaatctgcaggacaaaatcttttctattgaagggtctcagtccagtggagag
tcactgaaaatggaaatggctcaggaaggattcagtgctgcttatataccagggggagtt
cagacggctattgttggtgccaaccagtggaaaggaggatacctgaaatacacaagtcga
ggccagaagcagagctcatatgagcctacgtctatggagcctgacagttatctgggttac
tccatggcagtgggtaaaaccaaagaaggcacattgacaattgttggtgctccaagatat
caacacagaggaattgtgatgggagttcaagaaaacgagagaagccagacaattgatcca
catccatggcagtctcagactggtgaatattttggggcagaggtttgtgccatggatgtg
gatcgtgacagctacactgacctaatcctcatatctgcccccatgtacacagacactgac
agagagggaagagtttacgtttgcagtttagttcgtttgaatgtcgagtgtcactttgag
tctccgatagttctgagagggggtgtatctgacagaggaaggtttggctcttctcttgct
gtgctgcctgatcttaatgcagatggactcagtgatttggcagttggagcacctttggag
aatgacggtcagggcagcatctacatattcctcggtgaaggaggaagaacagtccgttct
acgtactcacagaggattcctgcatctgaagtaaagtcaggactgaagttttttggtata
tcgatcagtcagtcatcttttgaccagagtgtggacagcctgcctgatctggtggtgggt
tcaaagggcacagttgtcttactgagatcaaagcctatagtaatggtagaagtaacagtg
tcatacagcccaaaagaaatcccttctcaaaacaatgactgcacaaacgcactggagaac
acagctgaaatctgctttaccatgtccagagtctccacagtaaacacagctcgagcaacg
attcgttatgatttcacactggatgccactcgtaaggtcccaaacaacagagcttacatc
actgacaaacaacgtgagaagacagaatcattggctattaacttaggacagcgacaatgt
tccagggtgaaattctttattgatgcttgtccagaagatgctctcaattcactcagcaat
gagctcagattcacctttgatggtgtgctctctgatacaaatctcagaccaagtctcgct
caggacgctaaaacaacagccatttaccctatagggtttgagatcaactgcggcactgac
aacaaatgtgtagataacctgaaagtagatttcaacttcaccagttcctcagtggttaaa
gtgggcattgatgaactgttggatgtcaccgtatcagtggagaacagagaggaaaactcc
tacaacagccgtgttattctcacatacccagctgagctgtcctacaggaagttcacaagt
ctgcagggaagaattgaatgcaactctgtggacagtgaagatggcttatcacgaggaaag
acagagtgcacaattgacaagcctattttcaagagcagagctaaggctttcttcactgtc
tcctatgggattgaaaccaacagtcaacttgagaggaggatttttgtcacggctaacgct
accagtgggaatcagtatcaatccccttcaagtgaactttacaaaaaggaatggattgat
gtgaagtacagcatatttgtttcatttgaaagtaccctcagctacaccaatttcactttt
ggaaagaataatttgcagaaaccaatccaacaaacaattgtggttacaaatgacatcaga
gcgttgaatttcactgtagtgatcaaggtgccagtaaagcttggtgataaagacatctgg
gtggattcgaacagtttgcagattccagactgccaaagagacagagatgacgaacctaat
gtcacagattttgttgctcagatacagaaaaataaagtagtggactgctctgtagccaag
tgcagagtgttcaagtgcacaaggttcatgggaagatcggaaagaaaaaactacataatc
tctgccaaccttagctcaggatggatagagcagattggatttaagtccgccaagttcctt
ttgaccagcacagccagtctggagtacgacagtaaccagttcatcttcttttcaacaggg
tctaataacaaccctcccattcgcaagattgaggcagagatagaggtgtattcagaagca
gacttcaccaaagggaatgttggaggaacgctaggaggaacgctgggaggaacactggga
aggacgctgggagggatcttgggaggaatgctgatagggttggctctactggctgcactc
actgctggcttgtataaggctggatttttcaagagtaaatacaaggagatgattaagaaa
gatgcaggagaaagaccagtttcagggtctgatgcagccacgccagaacaacatgaatta
gttgagtttacatctcactga
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