Lates calcarifer (barramundi perch): 108890451
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Entry
108890451 CDS
T04895
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108890451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108890451
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108890451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-B_box
zf-C3HC4_4
zf-RING_5
zf-C3HC4_3
zf-RING_6
zf-RING_2
Cep57_MT_bd
Sina_RING
Prok-RING_4
APP_E2
DUF1664
DUF5799
DUF488-N3i
Aldedh
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
108890451
NCBI-ProteinID:
XP_018542834
UniProt:
A0A4W6DFD2
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All DBs
Position
LG7_1:complement(3332940..3345414)
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AA seq
366 aa
AA seq
DB search
MNFALSFKPPSAGSSGPGAGGGATMENLEKQLICPVCLEMFSKPVVILPCQHNLCRKCAN
DIFQSANPLWQSRSSSSITASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYRQQ
ESSRLVNIKPEQQQQQLMCEEHEEEKINIYCLSCQTPTCSMCKVFGQHKDCDVAPLSSVY
MRQKTELTDGIANLVASNDHIQAVISQMEEMCRTVEENGQRQREQLANHFDCLVAILEER
KQELVGLISRQQDDKLKHVRSLIRRHSDQLEAAVTLVESAIQSMEEPHMPLFIQSAKLIL
ENMAATARASNVKRPELGYENMSHFVIDTDDLADMLRNIDFCPGVGDDGEEDPEEEESDL
DFGSRY
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgctctgagcttcaagcctccatcagcagggagttctgggcccggcgccggc
ggcggagccaccatggagaacctggagaagcagctgatctgccccgtctgcctggagatg
ttctccaaacccgtggtcatcctgccctgccagcacaacctctgccgcaagtgtgccaac
gacatcttccagtcagccaaccctctgtggcagtcccgcagctcctccagcatcacagcc
agcggcgggcgtttccgctgcccgtcctgccgtcacgaggtggtgctggaccggcatgga
gtctacggcctgcagaggaacctgctggtggagaacatcatcgacatctacagacagcag
gagtcctccaggcttgtaaacataaaacctgagcagcagcagcagcagctcatgtgcgaa
gaacacgaagaggagaagatcaacatctactgtctgtcatgtcagacgccgacctgctcc
atgtgcaaagtgtttggacaacacaaggactgtgatgtggctccgctcagcagcgtctac
atgagacagaagacggagctgaccgacggcatcgcgaacctggtcgccagtaacgaccac
atccaggcggtcatctctcagatggaggagatgtgtcgcaccgtggaggagaacggtcag
cggcagagagagcagctggcgaaccacttcgactgtctggtggccatcttggaggagcgg
aagcaggagctggtgggtctgatttccaggcaacaggacgacaaactgaaacacgttcga
tccctgattcgtcgacacagcgatcagctggaggccgcggtcacgctggtggagtcggcc
attcagtcgatggaggagccacacatgcctctgttcatacagagcgccaaactcatactg
gagaacatggcagcgacggcgagggcctccaatgtgaagcgtccagaacttggttacgag
aacatgagccactttgtgatcgacaccgacgacctcgctgacatgttgaggaacatcgac
ttctgtcctggtgtgggagacgacggagaagaggatcctgaggaagaggagtcagacctt
gactttggcagcagatattaa
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