Lates calcarifer (barramundi perch): 108890553
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Entry
108890553 CDS
T04895
Symbol
hcfc1b
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1b
KO
K14966
host cell factor 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03083
Polycomb repressive complex
lcf04980
Cobalamin transport and metabolism
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108890553 (hcfc1b)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
108890553 (hcfc1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108890553 (hcfc1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108890553 (hcfc1b)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108890553 (hcfc1b)
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108890553 (hcfc1b)
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108890553 (hcfc1b)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
108890553 (hcfc1b)
HMT complexes
COMPASS/SET1 complex
108890553 (hcfc1b)
MLL-HCF complex
108890553 (hcfc1b)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
108890553 (hcfc1b)
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
108890553 (hcfc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_ATRN-LZTR1
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
Kelch_2
fn3
Motif
Other DBs
NCBI-GeneID:
108890553
NCBI-ProteinID:
XP_050927483
UniProt:
A0AAJ8B8Y1
LinkDB
All DBs
Position
LG6:27749831..27763600
Genome browser
AA seq
1599 aa
AA seq
DB search
MASESATPAVLQPRWKRVVGWTGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHVYNT
ATNQWFIPAVRGDVPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLK
AKAPKNGPPPCPRLGHSFSLIGSRCYLFGGLANDSEDPKNNIPRYLNDLYCLELRPGSSV
VGWEIPMTSGQPPPPRESHTAVVTSGHGASRLIIYGGMSGCRLGDLWVLDIDTLTWSKPA
LIGTAPLPRSLHSATTINNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSMCW
ETVLMDSLEENVPRARAGHCSVAINSRLYIWSGRDGYRKAWNNQVCCKDLWYLETERPCA
PSRVQLVRANTSSLEVSWGPSQTADMYLLQLQKYDIPATPAANSPASSPAPNPISMVTPG
ASSSKSPTPSAALPANQAVPLSGITLVPSPTASVPGSPLAAAAKAPAVLKVAAAPGAGGG
ASIVTVRQATPKPTVPVTTLPAGVRMVVPAQAGQATPIGSSPQMSGMAALAAAAAATQKI
PPSSAAVLNVPAGATIVKTVAVSPGSSSLPVKVAAPVTMVSNPATRMLKTAAAQVGGASV
VSNPGTPGRPIITVHKSGTVTVSPQAQVVTTVVGGVTKTITLINSPLSVGGGGALIGNLG
NLGKVVSVVQTKPVQSGAVTGQAGSSPVSQIIQTKAGLPAGTILKLVSSADGKQTTILST
AQAGSTPTKSTILGVAPTTSKPGTTIIKTIPVSALQGGAGGNSPITILTTKVMTPGTMGK
ILTTVPKISAGGQQGVTQVVLKGASGASGTILRTVPMGGVRLLSPGAVGSKPSVTTLVVK
ATTGVSSLGTVTGSVSTTVAGGVLTAASPSLPTPITTLATIASLASQVTTAAAAAAGPKQ
VTLITTPSGAEAQLLPQDLPVSIMASPTSEEPGSTTSTMTTTVGGEAGDTSAATVTLVCS
NPPCETHDTGTTNTATVASASMNRETQVSSNLSAVTCSNPPCETHETGTTNTATMAGAGG
LRQVCSNPPCETHETGTTNTTTTAGAGGLRQVCSNPPCETHETGTTNTATTATAQQGGDS
QQVDSTDPASSSDHASSTTANQNRAITTVTQATPTPGPSITEISSLVGEDRMESSEAVAM
VTAEEGEEPGLQVHVEGSEAAAQVTHTLRCTEXXPISSFFSNPSPSPQMETSDSGLPQEL
MSSEGDGGEVVSGTTTLMVTTGQTPDQLAVTMVTEDAAQQATIQAVLQAAGEGEGSEDQS
IPIVLTQQELAALVQQQQQLQDVQDQPEPEPQQSSVPTEGLAPADSLNDPAAESNGHELT
SSAVTSAVARLASTFSPAPPLTAGPAKIQAAAMVTMATNGVAATAGKQGIQVKSSVRDSR
WYDVGIVKVTNMVVSHFYVPYDDNMADDDSGVVPDYSQMRKVDLQPGTAYKFRVAGINIC
GRGAFSEVSAFKTCLPGFPGAPCAIKISKNLDGAQLTWEPPAVTSGKIVEYSVYLAIQSS
QASSGSGSSPAQLAFMRVYCGPNPSCLVQACSLSNAHIDYTTKPAIIFRIAARNQKGYGP
ATQVRWLQETSKDVKPAVKRPGSSPDHKPVGQKKFRTDQ
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgaatccgccacccccgcggtgctgcagcctcgttggaagcgcgtcgtgggc
tggaccgggccggtaccgcggccccggcacggacaccgagccgtggccataaaggagctg
atggtggtgttcggcggagggaacgaggggatcgtggacgagctgcacgtctacaacaca
gccaccaaccagtggttcatcccggcggtgcgcggtgacgtcccccccggctgcgctgcc
tatggcttcgtgtgtgatgggacgaggttgctggtgtttggagggatggtggagtacggc
aaatacagcaacgacctgtacgagctgcaggcgagtcgttgggagtggaaacgtctgaag
gccaaagctccgaaaaacggcccgcccccctgcccccgcctcggacacagcttctctctg
attggcagccgctgctacttgtttggaggactggccaatgacagcgaggatcccaagaac
aacatccccaggtacctgaacgacctgtactgcctggagctgcgtccgggctctagcgtg
gtgggctgggagatcccgatgacgtcaggtcagccgcctccgcccagagagagtcacacg
gccgtggtgacgagcggccacggagccagcaggctgatcatctatggagggatgagtggc
tgcagactgggagatctgtgggtccttgacatagatactctgacctggagtaaacctgcc
ctcattggaaccgcccccctaccccgcagcctccactctgccaccactatcaacaacaag
atgtatgtgtttgggggttgggttcccctggtgatggatgatgttaaagtggcgactcat
gagaaggagtggaaatgcaccaacacgctggcctgcctcaacctggactccatgtgttgg
gagacggtcttgatggacagtctggaggagaacgtccccagagctcgagcaggtcactgc
agcgtggccatcaactccagactttacatctggagcggcagggatggatacaggaaggcc
tggaacaaccaggtgtgctgcaaggacctctggtacctggagacagagcgtccctgcgcc
ccctctcgggtgcagctggtccgagccaacacgtcgtctctggaggtgagctgggggccg
tcacagaccgccgacatgtacctgctgcagctgcagaagtacgacattcctgctacacct
gcagccaactcacctgcctccagccccgcccccaaccccatctccatggtcacacctgga
gccagctcctcaaagagccccacccccagcgctgcattaccggccaatcaggctgtccca
ctgtctggcatcacactcgtcccctcccccactgcctcagtacctggaagcccattggct
gcagctgctaaagcaccagcggtcctgaaggtggcagcagctccaggtgcagggggcgga
gcctccatcgtcacagtgagacaggccacgcccaaacccacagttcctgtgacaacactt
cctgcgggtgttcgtatggtcgtacctgcccaggccggacaggccacgccaatcggcagc
agtcctcagatgagcggcatggcggcattggcggcggcggccgcagcgactcagaagatc
cctccgtcctcagcagcggtgctgaacgtccccgcaggtgctacgatcgtaaagacggtg
gccgtcagcccggggtccagcagcctgccggtcaaagttgctgctcctgttaccatggtg
agtaacccagccactcggatgttaaagacagctgccgctcaagtgggcggagcctcggtg
gtgtccaatcctgggacgccgggccgaccaatcatcacggtccataagtcgggcacggtg
acggtgtcaccgcaggctcaggtggtcaccacagtggtgggcggagtcaccaagacaatc
accctcattaacagcccgctcagtgtgggaggaggcggggctctgattggtaacctcggt
aaccttggaaaggtggtgtcagtggtccagaccaaaccagttcagagtggagctgttact
ggtcaggccggcagcagcccggtctcccagatcatccagacgaaggccggcctcccagca
ggaaccatcctgaagctggtgtcatcagcagacgggaaacagacgaccatcctcagcaca
gctcaggctggatccacaccgaccaaatccaccatcctgggcgttgctccaacaacttcc
aaacctggaaccaccatcatcaagaccatcccggtgtctgcgctacaagggggggcaggt
ggaaacagtccaatcaccatcctgaccaccaaggtaatgacgccgggaaccatgggaaag
atcctcaccaccgtccccaagatctctgcagggggtcagcagggggtcacacaggtggtg
ctgaaaggagcttcaggtgcgtcaggtaccatcctcaggaccgtcccaatgggcggagtc
agactgctgtcaccaggagctgtcggctccaaaccctcagtcactacactggtcgtcaag
gcaaccacaggtgtgtccagtctggggacagtaacaggaagtgtctccaccacagtggca
ggtggagtcctcactgccgccagcccctccctaccgacgcccatcaccaccctggcaacc
atcgcttcactggccagccaggttaccacagcagctgctgctgcagccggacccaaacag
gtgaccctgatcacgactccaagcggagctgaggctcagctgctgcctcaggatcttccc
gtttccatcatggcctctcctacctcagaggaacctggaagtactacaagtactatgact
actacagtaggaggagaggctggagatacttcagctgctacagtgacactggtctgctcc
aacccgccctgcgagacacacgacaccggcaccaccaacactgccaccgttgcctccgcc
agcatgaaccgagagacacaggtgagctccaacctgtccgctgttacctgctctaatccg
ccgtgtgagacgcacgagactggaaccaccaacaccgccaccatggctggagctggaggt
ctccgacaggtgtgttcaaatcctccgtgtgagacacatgagaccggaaccaccaacacc
acgaccacagccggagctggaggactgcgacaggtgtgttcaaatccgccgtgtgagacg
catgagaccggaaccaccaacactgcaaccacagctacagctcagcagggtggagacagt
cagcaggtcgactccacagaccccgcctcctcctctgaccacgcctcgtccaccacggcc
aatcagaacagagctattaccacggttacacaggcgacgcccacacctggaccatccata
actgagatctcgtcattggttggggaggacaggatggagtcctcagaggcagtcgccatg
gtgaccgcagaggagggggaggagcctgggctgcaggttcatgtggagggcagtgaggca
gcagcacaggtaacacacacactcaggtgcacggagtaataaccaatcagctcgttcttc
tctaacccctccccctccccccagatggagacctcagacagtggtcttcctcaggagctg
atgtcatcagaaggggacggaggtgaggtggtttctgggacaacgaccctgatggtgaca
acagggcagaccccagatcagctggctgttaccatggtaacagaggacgcagctcagcag
gcgacgatacaggcggtgctgcaggcggccggtgaaggtgagggctcagaggatcagtcc
attcccatcgttctgacccagcaggaacttgcagctctggtccaacagcagcagcagctg
caggatgtccaggaccaaccagaaccagaaccacagcaaagcagcgtccccacagagggc
cttgctccggccgacagcctcaatgacccagcagcagagagcaacgggcacgagctgaca
tcatcagcagtgacgagcgccgtcgcccgattggccagcacgttcagccccgcccctcct
ctgacagcaggtccggctaagattcaagctgctgccatggtgaccatggcaaccaatggc
gtcgcagcaaccgcagggaaacagggcatccaggtgaagtcttcggttcgggacagtcgg
tggtacgacgtcggcatcgtcaaggttacaaacatggtggtctctcacttctacgtccca
tacgatgacaacatggccgacgatgactcaggtgtggtacctgactacagtcagatgagg
aaggtggacctgcagccgggaacagcctataaattccgtgttgctgggatcaatatctgc
ggccgcggagcgttctccgaggtgtcggcatttaaaacgtgtctgcctggtttccctgga
gcgccctgcgccatcaagatcagcaagaacctggacggagcccagctgacctgggagcct
cctgctgtcacctcagggaagattgtggagtactctgtgtacctggccatccagtccagc
caggcctcctccggttcaggttccagtcccgcccagctggccttcatgagggtctactgt
ggtcccaacccgtcctgcctggtccaggcctgcagcctctccaacgcccatatcgactac
accaccaaacccgccatcatcttccgcatcgctgcccggaaccagaagggctacggtcca
gccacgcaggtccggtggttacaagaaaccagtaaagacgtcaaaccagcagtgaagaga
ccaggatcttctccagaccataaacctgtcggacagaagaagttcagaactgaccaatag
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