Lates calcarifer (barramundi perch): 108890563
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Entry
108890563 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: FYVE, RhoGEF and PH domain-containing protein 1
KO
K05720
FYVE, RhoGEF and PH domain containing 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108890563
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108890563
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
108890563
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RhoGEF
PH
FYVE
SOS1_NGEF_PH
FYVE_2
RHG20_PH
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
108890563
NCBI-ProteinID:
XP_018542977
UniProt:
A0AAJ7Q041
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Position
LG6:27617955..27640465
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AA seq
1064 aa
AA seq
DB search
MQLNRPRSALLGFSLPPPPPPPPPASFSSQFSTMRFSYHLTPPLQPPPPPPHNSSSTCRT
GPSSSSSPSLLTKSLSLEPSCSPCGHQGALDADTPQQPSSDPGPSSSSSGPASLDGGVEL
MERRGSADGLLLVNDTGPPELPATTITPPSKSRPPLPGPKPQVPPKPPHLQQQAGVSRPR
PRAPDKPLPPPPPCRPLPADPRXGRTPPTRADGTASPTCVLSLIEKFEREQIIVVPDITG
GALCPRLPDPPSSLSSSRPSSPPSSSSPAPPPPDEEVPPEVKGHDDITEGEGEGDVRNDD
DDDDDEELAVACCDNLHQKRLSMESGYSASEKHLEDDVVAVEMRESQQQPPLLDQSELPS
ERLSLPSSQTDGKLANRDSGIDSISSPSHSEELCFAGVDDGGVAYPCSPALLPRLSSSSS
YAGEGGEGEGEGVEVEARGAVRRRREFSEEGDSDLEEEEEAELTLVLPPPKTDRQDSAEL
SVQQRVFNIANELLHTEIAYVSKLHLLDQVFCARLLEEARSRSSFPCDVVQGIFSNICSI
YCFHQQFLLPALQKRMEEWDLNPRIGDILQKLAPFLKMYGEYVKNFDRAMELVNTWMERS
AQFKTIIQEIQREERCGNLTLQHHMLEPVQRIPRYELLLKDYLHRLPEDAPDHRDAQKSL
ELIATAAEHSNAAIRKMERMRKLLKVYELLGGEEDIVNPTNELIKEGHILKLSNKNGTTQ
DRYLILFNDRLLYCVPKLRLIGQKYGVRARIDVDGMELKETSSVAVPRTFLVSGKQRSLE
LQARTEEEKKDWIQAIQATIQRHEQTVESFRHLNCSLRDDESTPPHSPSCVELGKRAPTP
IREKEVTLCMKCQEPFNSITKRRHHCKACGHVVCGKCSEFRARLSYDNNRTNRVCVDCYA
TLVGVLPSPATLSSSTQRRRSILEKQASLAAENSVICSFLHHMEKGGGRGWQKAWFVIPE
NEPLVLYIYGAPQDVKAQRSVPLIGFEVSLPESCDRLERRHAFKISQSHLTLYFSAEGEE
LQRRWMDILSRAGRGEEPQVHRPIVESLEEEGEELVAAVEGENT
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgaaccgacctcgcagcgccctgcttgggttcagcctccctcctcctccccct
cctcctcctcccgcctccttctccagtcagttcagcaccatgaggttctcctaccacctg
acccccccactccaaccacctccacctccaccacacaacagcagctccacctgcaggaca
ggtccctcctcctcctccagtcccagcttgctgactaagagtctctctctggagccgtcc
tgctccccctgtggacaccagggggcgctggacgctgacactccccagcagccgagctct
gacccggggcccagctcctcctcctcaggccccgcctctctggatggaggggtggagcta
atggagcgccgtggatccgctgacgggctgctgctggtcaacgacacggggccgccggag
ctgccggctaccacaataacaccaccgagcaagagccggccgccgctgcccgggcccaaa
cctcaggtccccccgaagcccccccacctccagcagcaggcaggggtgtcgaggccacgc
ccccgggctccggacaaacccctccctcctccaccgccctgcagacccctcccagcagac
ccacggngggggcggactccacccacccgcgccgatggcaccgcctcccccacctgtgtc
ctgtccctcatcgagaagtttgagcgtgagcagatcatcgtggttcctgacatcaccggg
ggggctctgtgtccccgcctccctgaccccccctcctccctctcctcctcccgaccttca
tcaccaccgtcatcatcatcccctgcccctccccctcctgatgaggaggtgccccctgaa
gtcaaaggtcatgatgacatcacagagggtgagggggagggcgacgtacgaaacgatgat
gatgatgacgatgatgaagagctggcggtggcgtgttgtgacaacctccatcagaagcgt
ctgtcgatggagtcgggttacagtgcgtcagagaaacacctggaagacgacgtggttgcc
gtggagatgagggagtcacagcagcagccgccgctgctcgaccaatcagagctgccctcg
gagcgtctgtccctgccctcctcccagacggacgggaagctggccaatcgggacagcggg
attgacagcatcagctccccgtcgcacagcgaggaactctgcttcgcaggcgtggacgat
gggggcgtggcttatccatgcagccccgccctcttgccccgcctctccagctcgtcctcg
tacgcgggggagggaggggagggagagggagagggggtggaggttgaggcaaggggagcg
gtgaggaggaggagggagttctctgaggagggagacagtgacctggaggaagaggaggag
gcggagctaacgctggtgctgcccccacccaagacagacagacaggactctgctgagctg
tccgtccagcagagggtcttcaacatcgccaacgagctgctgcacacagagatcgcctac
gtctctaagctccacctcctggaccaggttttctgtgccagactcctggaggaggctcgg
tcccgctcctccttcccctgtgacgtggttcagggaatcttctccaacatctgctctatc
tactgcttccatcagcagttcctgctgccggcgctgcagaaacggatggaggagtgggac
ctgaacccgcggatcggggacatcctgcagaagctggctcccttcctgaagatgtacgga
gagtacgtgaagaacttcgaccgagccatggagctggtcaacacttggatggagaggtcg
gctcagttcaagaccatcatccaggagatccagagggaggagcgctgtgggaacctgact
ctgcagcatcacatgttggagccggttcagaggatccctcgctacgagctgttgctcaaa
gactatctgcaccggctgccggaggacgccccggaccacagggacgcccagaagtctctg
gagctcatcgccacagcagccgaacactccaacgccgccatcaggaagatggagcggatg
aggaagttgttgaaggtgtacgagttgttgggaggagaagaagacatcgttaacccgact
aacgagctcattaaagaaggacacatcctcaaactgtccaataagaacgggaccacgcag
gacagatacctcatactgtttaacgacaggttgctgtactgcgtcccgaagctgcgtctg
attggtcagaaatacggagtccgtgctcgcattgatgtggacggcatggagctgaaggag
accagcagcgttgcggttcccaggaccttcctggtttctggaaaacagagatctctggag
cttcaggccaggacagaggaggagaagaaggactggatccaggcgatccaggcaaccatc
cagagacatgagcagacggtggagagcttcagacacctgaactgttctctgagagacgac
gagtcgacgccgcctcactccccgagctgcgtggagctggggaaacgagctccaaccccc
attagagagaaggaggtcactctgtgtatgaagtgtcaggagccgttcaactccatcacc
aagaggaggcaccactgtaaagcctgcggacacgtggtttgtgggaaatgttcggagttt
cgcgcccgtctgtcgtatgacaacaaccgcaccaaccgtgtctgtgtcgactgctacgcc
acgctggtgggggtgctgccgtcgcccgccacgctgagcagcagcacccagaggaggcgc
tccatcctggagaaacaggcctccctggcagcagagaacagtgtgatttgtagttttctg
caccacatggagaagggaggggggcggggctggcagaaggcctggttcgtcatccctgag
aacgagccgctggtgctctacatctacggagctccacaggacgtgaaggcgcagcgcagc
gtccctctcattggcttcgaggtctctctgcctgagtcatgtgaccgtctggagagacgc
cacgccttcaagatctcccagagtcacctgaccctgtacttcagcgcagagggggaggaa
ctgcagcggcggtggatggacatcctgtcgagggcggggaggggggaggagcctcaggtc
caccggccaatagtggagagtctggaggaggagggggaggagctagtggcggcagtggag
ggcgagaacacgtga
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