Lates calcarifer (barramundi perch): 108890566
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Entry
108890566 CDS
T04895
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108890566
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108890566
04131 Membrane trafficking [BR:
lcf04131
]
108890566
03036 Chromosome and associated proteins [BR:
lcf03036
]
108890566
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108890566
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108890566
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108890566
Membrane trafficking [BR:
lcf04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108890566
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
108890566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
108890566
NCBI-ProteinID:
XP_018542983
UniProt:
A0AAJ8B6V2
LinkDB
All DBs
Position
LG6:27666292..27680063
Genome browser
AA seq
1107 aa
AA seq
DB search
MFHTSLRLFRLSPHLFFFFFFFEMFLLLSSSSKGTEERRGGNSLKEVKRRGRMERSREEE
LNDRLQTLDLSSRSAASGTGLIFSEIFTHHKNLWEPSHVESPDRVTSIIEELEKQELLSH
CIRVEPRPASEEELLLAHMKQYVDLMRSTQTISETELHALSEKYDSIYFHPETFQVSVLA
VGSVLQLVDQVMTSDLRNGFAVIRPPGHHAQVNQASGYSVFNNVAIAARYAQTRHSVSRV
LIVDWDVHHGQGIQYLFQEDPSVLYFSVHRYEQGSFWPHLPESDSRFVGSGRGEGRNINL
PWNKTGMTDADYIAAFQQLLLPVAYEFQPQLVLVSAGFDAAVGDPKGEMCVSPQCFQVLT
HLLMSLAEGRLVLALEGGYNLQSTAEGAAACVRALLGGGCPPLTPPTAPSDSALQSISQT
LCALYPHWASLQVLEGSSLAERDLIRATTNEQSSKQTGSTPTVAVTTGLVYDERMMEHLN
MWDRHHPEQPQRISKIFSKHQQLGLVDRCQRIPARLATEEELSMCHSVQHVEQMKATALM
KPRDLHKLGEEFNSIYINNQSFQSAQLAAGSCFNAVEAILSGEVSNGVAIVRPPGHHAER
DSPCGFCFFNTAALTARHAQKISHHSPLRVLILDWDVHHGNGTQHMFEDDDSVLYVSLHR
YDNGTFFPSSEDAAADRVGVGRGAGCNVNVAWSGGRMGDSDYLAAFHHIVMPIATEFNPG
LVLVSAGFDAARGDPLGGYHVTPEGYAHLTHLLMSLAGGRVLLILEGGYNLSSISDSMAM
CTSVLLGDPPPSLVTPLPPPHHSAVATISEVIRHHAPYWRSLRIHIPESVRASLSSLKHR
GKRSSKGKGRKSEQSGGDKPPLPRTGAEDTTTERSLDQLAQGLASLDISQTSANHVPAVS
TPVGGARPKVRLSPEKVICADEVKVESSAAAAVQSQSADSARPQTVAVAAPELVAAGDEV
SGRVGVEPEAEGACGWSKPQMSVELTYGGQTDAPTLYVIDPLPWCPHLDAVKPLPPSGVD
VFLPCQDCGSDAENWICLTCYQVFCGRYVNEHMLTHGTVSEHPVVLSFSDLSVWCYLCEA
YIHNQILFEAKNAAHCAKFGEEIPPWS
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgtttcacacttctctcaggctgttcagactcagtcctcacctcttcttcttcttcttc
ttctttgagatgtttcttctcctcagcagtagcagcaaagggacggaggagaggagagga
ggaaacagtctgaaggaggtgaagaggagaggaaggatggaaaggagcagagaggaggag
ctgaatgacagactgcagacactggacctgtccagtagatcagcagccagtggtacaggt
ctaattttctctgagatcttcactcatcataagaacctgtgggagcccagtcatgtagag
agtccagacagagtgacgtccattatagaggagctggagaaacaagagctgctgtctcac
tgcatcagagtggagcccagaccagcctcagaggaggagctgcttctcgctcacatgaaa
cagtatgtggacctgatgagatcgactcagacgatctcagagactgagttacacgctctg
tctgagaaatacgactcaatttacttccatcctgagaccttccaggtgtctgtgttagcc
gtgggttcggtcctgcagctcgttgatcaggtgatgacctctgacctcaggaatggtttc
gctgtcatcagacctccaggtcatcacgctcaggtgaaccaggccagtggttactctgtc
ttcaacaatgtggcgattgcagctcgatacgctcagaccagacactccgtcagcagggtg
ttgattgtggactgggacgttcatcatggtcagggcatccagtacctattccaggaagac
cccagcgtcctctacttcagtgtccacaggtatgagcagggctccttctggccacacctc
ccagagtctgacagtcggtttgtcggcagtggacgaggtgaggggagaaacatcaacctg
ccctggaacaagacgggaatgactgacgctgattacatcgctgcttttcaacagctgctg
cttcctgtggcctacgagtttcagcctcagctggttctggtctctgctggatttgatgct
gcagtcggagacccgaagggggagatgtgtgtgagtcctcagtgtttccaggtcctgact
cacctgttgatgagtttggctgaaggtcgactcgtcctcgctctcgagggaggttataac
ctgcagtcgacagcagagggcgctgcagcctgtgtcagagctctgctgggaggaggctgt
cctcctctgactccgcccaccgctccgtccgacagcgctctgcagtcaatctctcagacg
ctctgtgctctgtatccacactgggcgtctctacaggtgctggaaggcagctcgttggct
gagcgtgacctcatcagagcaacaaccaatgagcagagcagcaagcagaccggctccacc
ccaactgttgccgtgacaacaggcctggtttacgacgagaggatgatggagcacctgaat
atgtgggacagacatcatcctgagcagcctcagagaatctccaagatcttctccaaacac
cagcagctgggattggtcgaccgttgccaacggataccggctcgcctggcgacagaggag
gagctgagcatgtgtcacagtgtgcagcacgtggagcagatgaaggccacggcactgatg
aaacccagagatctgcacaaactgggagaagagtttaactctatctacatcaacaaccag
agcttccagtcggcccagttagctgctgggagctgcttcaacgccgtggaggccatcctg
agcggagaggtgagtaatggcgtggcgatcgtccgtcctcctggtcatcacgctgagaga
gactctccctgcggattctgtttcttcaacacggcggcgctcactgctcgccatgcccag
aaaatctcccatcattcaccactcagggtgctaattctggactgggacgttcaccatggc
aacgggacacagcacatgttcgaggacgacgacagcgtcctgtacgtctccctccatcgc
tacgacaacgggacgttcttcccgtcctcggaggacgccgctgccgaccgggttggcgtg
ggcagaggggcggggtgtaacgtcaacgtggcgtggagcggaggacggatgggagactct
gattaccttgctgcttttcaccacatcgtcatgccgatcgctaccgagtttaatcctggt
ctggttcttgtgtcagccgggttcgacgcagctcggggggatccactgggtggatatcat
gtgaccccagagggatacgcccacctcacacacctgctgatgtcactggccggggggcgg
gtcctactcatcctggagggaggctacaacctgtcctccatctctgactccatggccatg
tgcaccagcgtgctgctcggagaccctcctccatccctggtgacgcccctcccccctcca
catcacagcgccgtggcaactatcagtgaggtcatccgacaccacgccccctactggagg
tcgctgaggatacacatcccagagtctgtgcgggcgtccctgtcctccctgaagcatcgt
gggaaacgtagttctaaaggaaaaggcaggaagtcagagcagagcggtggagacaaacct
ccgttgcctcgtacaggagcggaggacacgacgacggagcgcagcctggaccagctcgct
cagggattggccagtctggacatcagtcagacctcagccaatcacgttcctgctgtgtcc
actccagtgggcggggccaggccgaaggtccggctcagcccggagaaggtcatctgtgca
gatgaagtgaaggtggagtctagtgcagctgcagctgtgcagagccaatcagcagacagc
gcacggcctcagacggttgccgtggcagcaccagagctggttgccgctggagacgaggtc
agtggcagagtgggggtggagccagaggcagagggagcgtgtggttggtcgaagcctcag
atgtctgtggagctgacgtatggaggacagacagacgcacccactctctacgtgatcgac
cctctgccctggtgtcctcacctggacgctgttaagcccctccccccctcaggtgtagac
gtcttcctgccatgtcaggactgcggctcagatgctgagaactggatctgtctcacctgt
taccaggtgttctgtggtcgttacgttaacgagcacatgctgactcacggaactgtgtct
gaacaccctgtggtcctgagcttctccgacctctctgtgtggtgttacctgtgtgaggcc
tacatccacaaccagattctgtttgaggctaaaaacgctgctcactgtgccaagtttgga
gaggagatccctccatggagctga
DBGET
integrated database retrieval system
