Lates calcarifer (barramundi perch): 108890587
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Entry
108890587 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: transcription intermediary factor 1-alpha-like
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lcf01001
]
108890587
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108890587
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108890587
Protein kinases [BR:
lcf01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
108890587
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108890587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4_2
zf-C3HC4
PHD-1st_NSD
PML_CC
DUF5054
DUF1351
FemAB_like
ParB
DUF7615
Motif
Other DBs
NCBI-GeneID:
108890587
NCBI-ProteinID:
XP_050933567
UniProt:
A0AAJ8DWF7
LinkDB
All DBs
Position
LG18:complement(3005357..3013974)
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AA seq
1100 aa
AA seq
DB search
MDESAENVDNDDIVIIVENEAESLPAEEERLKQQGTFGLMDTCPICKLSFHNREPKLLPC
LHSFCKRCLPAPFRSADPRRDSQGQVDSNKPLGAIRCPVCRQECWEMDVLDNFFVKDSAE
VPSSTVEKTSQVCMSCDDNTEATGYCVECVEFLCVTCIEAHQRVKFTRDHTIRQKEEMSP
EALGISTQRPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDAYRNHRQYL
ENMTQQLQEKRKAIEDVSSCISTGLQQVEENRKAVTNEIKKSICNLIMEINRKGKILINQ
LEALTKDHELGLKKQQEDVNSLSRHLDHVISFTKWATASHSGTALLYCKRLILFQIHYLM
RASCNPSIVPQSSVRFQCRSGFWATNVDLGSLVVERGPGRPPIPNHQAAPRAEAPAGGLS
VSAQQRQSTLAQLQMQVDKLSQQPHRQPPPNHWSWYQNVRLPGPPGPPPPTRPIHGGSSP
SQGPPSLAQAGRRFGNSHPNPRSPTSSMLHNTGFPPAQSLRDLIHSSSFPPKPMDVLQGT
SRYPQPLSAGAATQTSLHQRGLPESSFLKRSEASASVPSITISIPKPSLAPSLASAAAER
TSTLNHVTGRQNSPMAKPSSSDRSTGTTTWKQTAEPPSAPSAKRRRRSSPGPIIVIKDEP
EDEDEVRFVRRSVFVLLCYDFVFLYLTAWVAHRFSSSVGSSLPDSSTGAQSKPRQQPKAS
VPVPVPVSESKAGKDQRPQPTAQPESEKRAEPEEDPNEDWCAVCQNGGELLCCDKCPKVF
HLSCHIPTLNESPSGEWFCSFCRDLVTPEMEYDCDSKDDPASEGFPPVDRRRCERLLLRL
FCNDFSTDFQQAASPSETRRYKELIKTPMDLSIVKKKLESKAKDGECYSSPEGFVADVRL
IFFNCAKYYKATSEVGSAGLYLEDYFEEQLKLVYPDKVFPGGREEQMIPPLEDEIDEEEE
EMMEQGAAPAEGDKAQSPAGGGIPPVEEDLAPLEEAPAQAEEEQALTEEKGTDMSKKEKE
EKVEAAERGTPPAEGINQDEKTPAVEVKRSPAAGSETKDGGAPSSLKEDKPELQTEKTVD
PPETEKKAAAPADTAKEKEG
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagtgccgaaaatgttgacaacgacgacattgtcatcatcgtggagaacgaa
gcagaaagtttgccagcggaggaggagaggctgaaacagcagggcaccttcgggctcatg
gacacttgtcccatctgcaagttgagcttccacaacagagagcccaaactcctgccctgt
ctccactccttctgcaagaggtgtctgcctgcacccttcaggagtgccgacccgaggcgg
gactcgcaaggtcaagtcgacagcaacaaaccactgggcgccatccgatgtccagtgtgc
agacaagaatgctgggagatggacgtgctggacaacttctttgtcaaggactctgccgag
gtgccgagcagcaccgtggagaaaaccagccaggtgtgcatgagctgcgatgacaacaca
gaagcaacaggttactgcgtggagtgtgtggagtttctgtgcgtgacgtgcatcgaggcg
caccagagggtgaagttcaccagggatcacaccatacggcagaaggaggagatgtctcca
gaagcattaggtatttccacacagaggcctgtgttttgcgacatccacaagcaggagcca
ctgaagctgttctgtgagacgtgcgacagactcacctgtcgggactgtcagctgcttaag
cacaaggatcacaactaccagtttttggaggatgcatacagaaaccacaggcagtatctg
gagaacatgacgcagcagttacaagagaaaagaaaagcgattgaggacgtttccagctgt
atcagcactggactccaacaagttgaagaaaaccgaaaggctgtaacgaatgaaataaag
aagtccatctgtaatttgatcatggagatcaacaggaaggggaagattctgattaaccaa
ctcgaggctctgactaaggaccatgagttgggtttgaaaaagcagcaggaggacgttaac
tctctgagcaggcacctagaccacgttattagtttcaccaaatgggcaacagccagccac
agtggaacagccctcctgtactgcaagagactgatccttttccagatccattatctgatg
agagcgagctgtaatccctccatcgtccctcagagttctgttcgcttccagtgtcgctct
ggtttctgggccacaaacgtagacctcgggtctctggtcgtagagaggggcccgggacgg
ccacccatccccaaccaccaggcagctcccagggcggaagcacccgccggaggtctgtcg
gtctcggctcagcagcgacagagcacgctggctcagctccagatgcaggttgacaagctt
tcccaacagccccacagacagccccctcccaaccactggtcctggtaccagaacgtgagg
ctcccaggaccgcccggccctccacctccgaccaggcccatccacggggggtcctccccc
tcccagggtccccccagcttggcacaggcaggacgcaggtttgggaactcccaccccaac
cccagaagccccacctcctccatgcttcacaacacaggattcccacctgctcagtctctg
agagatctgatccatagctccagcttccctcctaaacccatggatgtgttgcagggtacc
tcccgctacccacagcctctgtctgccggagcagccacacagacgtcactacaccagagg
ggccttccagagtcctccttcctgaagaggagtgaagccagcgcttctgtcccgtccatc
accatctctatccccaaacccagcttagctccaagtctggcctcagcagctgcagagaga
acaagcacacttaatcacgtaacaggacggcagaactccccgatggccaaaccatcctct
tcagacagaagcacagggacgactacatggaagcagactgctgaaccgccatccgccccc
tcagccaaacgaagaagaaggtcgtcccctgggcccattatcgtcatcaaggacgaacca
gaggacgaggacgaagttcgctttgtaagaagaagtgtttttgtattgttgtgttatgat
ttcgttttcctgtatctaactgcatgggttgcccacaggttcagttccagcgtagggtcc
agcctgcccgacagcagcaccggggctcagtcaaagcccaggcagcagccgaaggcgtcc
gtcccggtcccggtccccgtgtcggagtccaaagccgggaaagatcagcgtcctcagccc
acggctcagccggagtctgaaaagagagcggagccggaggaagatcccaacgaggactgg
tgcgccgtctgtcagaacggaggagagctgctctgctgcgacaagtgccccaaagttttt
catctgtcctgccacatccccacgctgaacgagtcccccagcggcgagtggttctgttcg
ttctgccgagacctcgtcacgcctgagatggagtacgactgcgacagcaaggatgatccc
gcctctgagggattcccacctgttgacagacggaggtgtgagaggctgctgcttcgtctg
ttctgcaatgacttcagcactgacttccagcaggctgcttctccatcggagacgagaagg
tacaaagagctgatcaagaccccgatggatctgtcgatagtgaagaagaaactggagtca
aaagcgaaggatggtgaatgttatagtagtccagagggatttgtcgcagacgtcaggctg
atatttttcaactgtgcaaagtactacaaggcgacctcagaggtggggagcgcaggcttg
tacctggaggattactttgaggaacagctgaagctagtctacccagataaggtgttcccc
ggtgggagggaagaacagatgatccctcctttagaggatgagatagacgaagaagaggaa
gagatgatggagcaaggcgcggcacccgctgagggcgacaaagcacaaagtcccgcagga
ggaggaatcccccctgtggaggaggatttggctcctctagaagaggcgccagcccaggca
gaggaagaacaggcgttaaccgaggagaaagggactgatatgagcaaaaaggagaaggag
gaaaaggtagaagctgctgagagaggcacgcctcctgcagaggggataaatcaggatgag
aaaactcctgcagtggaggtgaaacgctcccctgctgctggtagtgaaacaaaagacgga
ggagctcccagctccctgaaagaggacaaaccagagctgcagacagaaaagactgtagat
ccacctgaaactgagaagaaggcggcggctcctgcagacacagccaaagagaaggaggga
tag
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