Lates calcarifer (barramundi perch): 108890662
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Entry
108890662 CDS
T04895
Symbol
si:ch211-11n16.2
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger FYVE domain-containing protein 1
KO
K17603
zinc finger FYVE domain-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108890662 (si:ch211-11n16.2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108890662 (si:ch211-11n16.2)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108890662 (si:ch211-11n16.2)
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108890662 (si:ch211-11n16.2)
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108890662 (si:ch211-11n16.2)
Membrane trafficking [BR:
lcf04131
]
Autophagy
Other autophagy associated proteins
Others
108890662 (si:ch211-11n16.2)
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitophagy factors
Other mitophagy factors
108890662 (si:ch211-11n16.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FYVE
FYVE_CARP1-2
GBP
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
108890662
NCBI-ProteinID:
XP_018543146
LinkDB
All DBs
Position
LG21:complement(2590391..2600413)
Genome browser
AA seq
655 aa
AA seq
DB search
MSEILMKEMESISIGPVKAEERADGVRSFLLVDEQENLQVRDESDFVDRLGCGDVAGVKV
LSIFGNTGDGKSHTLNHILFGGESVFFTSKSPSSCTVGVWAAYDPDLSLVALDTEGLLGA
AANQNQRMRLLLKVILVSDIVIYRTRAERLHNDMFHFLSSASRAYLKHFTPELRALSSRC
GLDVPLSSLGPAVIVFQETTHTQLLGHDSKMAGHADTLLQKRFHDLDLGTEAFSSVQYVG
TQTIRPPTNYTSLLDAVKQQVKNTHTRSPRQPGIVFHALEALSERFRGELSDDKMTLYSF
FPDEYFTCSAVCLSCNIRCKNGMNHLRDRVPHMADGLCQYAHQFNNKVLICKRCYEGGRE
VIVVPKTSASTDNPWFGLAKYAWSGYVLECASCGVIYRSRQYWMGNQDPESSVVRSEVKH
VWEGSDTFLTNHQNAAQRVLDGMNFVIQSVSEYSTGPTKAVAAWLTDQVAPPYWRPNTEI
TACHGCQKVFEEAERKHHCRSCGEGFCHPCSSHRMPVPERGWGTGPVRVCKACYRQGGPP
DTNSQVCKVEPRGLIARRVTEVAQSTLDMVTTAVDYPLCFVKDVARPDYWVPDQDITQCH
QCSKTFTPVMSKHHCRACGQGVCGPCSTHFRPVPSRGWDHPVRVCDSCHARTDSL
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagatattgatgaaggaaatggagagcatatcgatcggtccggtgaaggcggag
gagcgggcggacggtgtccggagcttcctgctggtggacgagcaagaaaacctgcaggtc
cgcgacgagtccgacttcgtggacagacttgggtgtggggacgtcgcgggcgtcaaggtc
ctctccatcttcggcaacactggcgacggcaagtcccacaccctcaaccacatcctgttc
ggcggcgagagcgtgttcttcacctccaagtcccccagttcctgtacggtgggagtgtgg
gccgcctacgaccctgacctcagcctggtcgccctggataccgagggcctgctgggagct
gcggccaatcagaaccagaggatgcggctgctgctgaaggtaattttagtgtctgatatc
gtcatctatcgtacacgagccgaacgcctccacaacgacatgttccacttcctgagcagc
gcctccagggcctacctgaagcacttcaccccggagctcagggccctgtccagccgctgt
ggcctggacgtgcccctctcttctctgggtccggccgtcatcgtcttccaggagacgacg
cacactcagctgctgggtcatgactccaagatggccggccacgccgacacgctgctccag
aagcggttccacgacctggatctggggacggaggccttcagctcggtgcagtacgtcggt
acccagaccatcaggcctcccaccaactacaccagcctgctggacgccgtcaagcagcaa
gtgaagaacacccacacccgctccccccgccagcccggcatcgtttttcacgccctggag
gcactgagcgagcgtttccgtggcgaactgtccgacgacaagatgacgctgtactccttc
ttcccagacgagtacttcacctgctccgccgtctgcctcagctgcaacattcggtgtaaa
aacgggatgaaccatctcagagacagagtcccacacatggcggatggactctgccagtat
gcacaccagttcaacaacaaggtcctcatctgcaaacgatgctatgaaggaggccgggag
gtgattgttgtgcccaagacgtcagcgtccaccgacaacccctggtttggactggccaag
tacgcctggtcaggttatgtgttggagtgtgcgagctgtggtgtgatctaccgcagcaga
cagtactggatgggaaaccaggaccccgagagcagcgtggtacgatctgaggtcaagcac
gtctgggaggggtcggacaccttcctaaccaaccaccagaacgccgcccagagggtcctg
gatgggatgaactttgtgatccagtcggtatcggagtacagcaccggccccaccaaagcc
gtcgccgcctggctcacggaccaggtggcgcctccttactggagaccgaacacagagatc
acagcctgtcacggctgtcagaaggtgttcgaggaggcggagaggaagcaccactgcagg
tcttgtggcgagggtttctgccacccctgctccagccacaggatgccggtgccggagagg
ggctggggcacgggacccgtcagggtttgtaaggcctgctaccgccagggaggtccaccg
gacaccaacagtcaggtgtgtaaggtggagcctcgtggtctgatagctcgccgggtgacg
gaggtggctcagtcgacgctggacatggtcaccacagctgtggactatcctctctgtttt
gtgaaggacgtggcccgtccggactactgggtgccagaccaggacatcacccagtgccac
cagtgctccaaaacgttcaccccggtcatgtcgaagcaccactgtagggcctgtggacag
ggcgtgtgcggaccctgttccacgcatttcaggcctgtgccttcccgaggctgggatcac
cctgtcagagtgtgcgacagctgccacgcccggaccgacagtctgtga
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