Lates calcarifer (barramundi perch): 108890932
Help
Entry
108890932 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-3-like
KO
K06482
integrin alpha 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04810
Regulation of actin cytoskeleton
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108890932
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108890932
09142 Cell motility
04820 Cytoskeleton in muscle cells
108890932
04810 Regulation of actin cytoskeleton
108890932
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108890932
04515 Cell adhesion molecules [BR:
lcf04515
]
108890932
04090 CD molecules [BR:
lcf04090
]
108890932
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108890932
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin alpha subunits
108890932
CD molecules [BR:
lcf04090
]
Proteins
108890932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_1
Integrin_A_Ig_2
FG-GAP
FG-GAP_3
Collectrin
LYRIC
LST1
Motif
Other DBs
NCBI-GeneID:
108890932
NCBI-ProteinID:
XP_018543528
UniProt:
A0AAJ7Q0K2
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MSPRLLLCAVLAVYHGTQTCSGFNIDERFPVIKEGKTKGSFFGFSVALHQQTEGSKKYLL
LAGAPKEKAQSLQNVNETGGVYSCPITTDTTDCSRMDLVSTTNPSSEMVEGMWLGVTVAT
QRDQPGGRILACGHRYVKVIQGGSEEQRRMIGKCYVRGNDLTYDPNDDWQTYNYEVCNPN
NNMEFEGMCNMGISAGMTDTDVYIGSAGSYMWQGNVHVTWRNPDPGYSWDSRDKDFGQLN
NRYSYMGYSVLEEKKLLSRDDYTVVTGSPRYESKGSVMFGTKTDNAIQQTLIITGEQVGS
YFGGSLAVTDLNNDNWNDLIVGAPFYFDRMNDHGGAVYIFMNENGSFEKTATKVLKGPSS
SGFGLAVAAIGDVNQDGFQDFAVGAPFHDTGKVYIWMGCKEGILENPSQVIEGKTVDNGG
FHTFGYSINGGMDMDESGYPDILVGSLDDRIALLRARPVVHLNTVFNAMPKIVDPNQCPG
NTPCITATLCMSFTLSNGNKDLKKNITVKYTVEADTERRRSPRVRFQSNNDDTYTGLLSL
QSSKSTCSELKLFVVAPVRDKLESVVFSLNISLHEQKPKSRRSLQNLDSFPVLSQGQKLT
QKDEIDFQKECGSDNKCSSNLQLTAKFVDDDDKPYPRDKLGLTQVLQFNTNMKIIRLMVE
VTNIPTGARLAEDAHQAMLNVTIPEALTYSGVRSSDHDVQCSLDTTVICELGNPLKGNER
VSLVLKFQTTGIDLYTQEINSQLLLSTLSEQSDLRPVPVALMIENTILPTFSLANALVQT
KFGGTVMGESAMVNTSDVGSLVEFTFKVNMRGQPLGNLGTLAVEFDWPYEVANGKWLLYL
TKIVVMGDSEMECNPPDSVVNNRNLTLSGSGPKRTKRQIVVDDGHDETQPHXIEPQAAIT
LVTHRKETHLLECSKGTAKCVKFSCPLLNMTDSAKIYVRSRLWNXTMLEDYSNALRVTVR
GHATLKLIKNTSNIKMENQTIMFTVEIEPVEGVETPYELPLWIIISAAVAGILLLGIIIL
ILWKCGFFQRASRREMYEAKAQKAEMKIQPSETERLTEDY
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgtctccaagactattactctgcgctgttctggctgtgtaccatgggacgcaaacctgc
agcggatttaacatagatgaacggtttcctgtgatcaaagaggggaaaaccaaagggagc
ttctttggattctcagtagctctgcatcaacagacggaaggctccaaaaaatacctgctt
cttgcaggagcgcccaaagaaaaagcccaatctctacaaaatgtcaatgaaacaggtggt
gtctactcctgccccatcaccacagacaccactgactgctccagaatggacctggtcagc
acaacaaatccttcttctgagatggtggagggcatgtggctgggtgtgacagtggccact
cagagggaccagccggggggacgcatactggcatgtgggcatcggtatgtgaaggtcatc
caaggtggctcagaggagcagcggcggatgatagggaagtgctacgtaaggggaaatgat
ctgacctatgacccaaatgatgactggcaaacgtacaattacgaggtttgcaaccccaac
aacaacatggagtttgagggcatgtgtaacatgggcatatcagctggcatgacagacact
gacgtctacatcggctccgcaggcagctacatgtggcaaggaaatgttcatgtaacatgg
agaaatccagatccagggtattcttgggactctagagacaaggactttggccagctgaac
aatcgatacagctatatgggttattcagttcttgaagagaagaagctgctgagcagagac
gactacacagtagtgacagggtctcccagatatgagtccaagggctctgtgatgtttggg
acaaagactgataatgccatccaacagaccctcatcatcaccggggagcaagtgggctca
tactttgggggcagtctggctgttactgatctcaacaatgataactggaatgacctgatt
gtgggtgccccattttactttgaccgtatgaacgatcatggtggagcagtgtatatcttc
atgaatgagaatggatcttttgagaagactgccaccaaggtactgaagggtccatcgtct
tctggatttggcttggcagtcgctgccattggtgatgtcaaccaagacggattccaagac
tttgcagtgggggctcctttccacgacacaggaaaggtctacatatggatgggatgtaaa
gagggaatcttagagaatcccagtcaggtgatagagggtaagacagtagataatggtgga
ttccatacctttggctactcaatcaatggagggatggacatggatgagagcggttaccct
gacatcttagttggttccctggatgaccgcattgccttgctcagagctcgaccagttgtc
cacttaaatacggtcttcaatgctatgcctaagattgtggaccctaaccagtgtcctgga
aatacaccatgcattacagcaactctgtgtatgtctttcactctgagcaatggaaacaaa
gacctcaagaaaaatatcacggtgaagtacacagtggaggcagacacggaaaggagaaga
agccctcgagttcgtttccagagcaataatgatgacacctataccggtttgctgagcttg
caatcctccaaaagcacatgttctgagctaaagctgtttgtagtggctcctgtgagggac
aaactggagtcagtggtcttttccctcaacatatccttacacgaacaaaagcctaaatcc
agacgctccttgcagaacctggactccttcccagttctgagccaggggcagaaactcact
caaaaagatgagattgattttcagaaggagtgtggctctgataacaaatgttccagtaac
ctgcagctgactgccaagtttgttgacgatgatgataagccttaccccagggacaagctg
ggtttaacccaggtgcttcagttcaataccaatatgaagatcataaggctgatggtggag
gtgactaacatccctaccggggcgaggttggccgaggatgctcatcaggccatgctcaat
gtcaccatccctgaagcgctgacatactctggtgtcaggtcatcggaccacgatgtacaa
tgcagtcttgataccacagtgatctgtgagctggggaatccacttaaaggcaatgaaagg
gtgtcacttgtcctcaagtttcagacaacagggattgatttatacacacaagagattaac
tcccagctacttctgtccactctcagtgaacagagtgacctgaggcctgtgcctgtggcc
ctgatgattgaaaacaccattctccccaccttctccttagcgaacgccttggtgcaaaca
aaattcggcgggacagtgatgggcgagtcagctatggtaaacaccagtgacgtgggcagt
ctggtggagttcaccttcaaagtgaacatgaggggacagcccctcggaaacttggggacc
ctggctgtggagtttgattggccctatgaggtagccaacggcaagtggctgctgtacctg
acgaagattgtcgttatgggggactcagagatggaatgtaaccctcctgactcagttgtc
aacaatcggaacctaactttgtcggggagcggacctaagcgtactaagcggcagattgtg
gtggatgatggtcatgatgagacacagccccatnacattgagccgcaggcagccatcaca
ttggtcacgcatcgaaaagagacccacttgttggaatgctcaaagggaacagcgaaatgc
gtgaagttcagctgcccactgctcaacatgacggattcagccaagatttatgtccggtcc
cgtttgtggaacngtacaatgttagaggactattccaatgctctgcgagttacagtcaga
ggtcatgccacactgaagctcataaaaaatacatcaaacatcaagatggaaaatcagacc
atcatgttcacagtagaaatagaaccagtggagggagtggagacaccctatgagctcccg
ctgtggatcatcatctcagcagcagtagcaggaattttactactaggaatcatcattctg
atactatggaagtgtggcttcttccagagggccagcaggagggaaatgtatgaggccaag
gcgcagaaggctgagatgaagatccagccctctgagacagagaggttgactgaggactac
tga
DBGET
integrated database retrieval system
