Lates calcarifer (barramundi perch): 108891051
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Entry
108891051 CDS
T04895
Name
(RefSeq) integrin alpha-7 isoform X1
KO
K06583
integrin alpha 7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04518
Integrin signaling
lcf04810
Regulation of actin cytoskeleton
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108891051
04518 Integrin signaling
108891051
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108891051
09142 Cell motility
04820 Cytoskeleton in muscle cells
108891051
04810 Regulation of actin cytoskeleton
108891051
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108891051
04515 Cell adhesion molecules [BR:
lcf04515
]
108891051
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108891051
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin alpha subunits
108891051
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_1
Integrin_A_Ig_2
FG-GAP
FG-GAP_3
Motif
Other DBs
NCBI-GeneID:
108891051
NCBI-ProteinID:
XP_018543686
UniProt:
A0A4W6DVU4
LinkDB
All DBs
Position
LG12:25867967..25895062
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AA seq
1127 aa
AA seq
DB search
MAAPVGHGNTVSLSSRSSHRWTTLLLWLLLTLFSQARGFNLDTTHTLHKFGDRGTFFGFS
LALHQQLSPEPQSWILVGAPQAAGQGRLRGSRPGALFRCPITPEEYDCERVDIDGEVSLD
RESKDNQWLGVTVKSQGIGGKVVTCAHLYELRQRVSQPSETRDPIGRCYVLSEDLTERDD
LDGGEWKFCEGRPQGHEQFGFCQQGLSVSFTPDNNFILFGAPGTYNWKGEMRVQLLNQTL
LDLGFYDDGPYEVADQKQLNAQLIPVPYHSYLGFSVDSAMGIMNLGELTFVAGAPRANHT
GAVLLLKKDNVYRLVPQHIFWGEELASSFGYSVATTDLNRDGWTDLIVGAPNFFDRKAEI
GGAVYVYLNPFGHWDDQARPIRLNGTYDSMFGMMVASVGDLDQDGYGDIAVGAPFDGDGK
VFIYRGSDAGIETKPAQVLDGRDFDVRRFGYSISGGLDIDNNQYPDIAVGSLNDSVVLFR
SRPVIHIIREISIDPQYIDLEQHNCKGRDGVCVEVKACFIFTAHPEHYSPHITLVVHFEA
DTERRKLGLPHRVTFLGRSSLEPEYIQTEEVELHRQHHPACTTAVFQLHESIRDKLRPIS
LAITHTIKSVPPRRHSGAKRLERLAPILNISPSNTLHSEVNFLREGCGADKICQSNLKLS
YQFGTRPLTSDLFTPLPKDEDDVQVFSLSDQRLVVLELTVTNMPSDPLYPEEDGDDAHAA
QLLISLPNTLSYAGSRIPPQMRCQANQNGSQVECDLGNPVKRDTKLKFSINLSTSNITIE
TTELTADLSLTTISEQPDLTPITAFAKVVIELPLSVSGLARPHQLFFSGAVRGESAMSSL
EDVGSPVDFEFVVANPGQALQTFGSAFLNIMWPYELTNEKWLLYPASLKFEGHPDTQCSP
TGALNPLKLQSSSPAELPQLIDHRAGRARRSYPEDEGQVMAKGNVGRTTPAVAASERRKS
LKLDCLLGSARCVLFQCPLHSFSGQAVLKIHARLWNSSFIEEFQAVSALELLVRANITVK
SSIKHLVLKDAAAQVPVMIYPEPGLADQYWIPWWIILIAVLAGILLLTLLVCILWKCGFF
RRAHYKDKLPQYHAVKIPREDRPQFQTEKSGVVHKKEWATHWSDGTS
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggcagccccagtgggacatgggaacaccgtctccctctcatctcgctcctctcatcgc
tggactaccctcctcctctggctgctgttgacccttttcagccaggcccggggcttcaac
ctggatactacccacaccctgcacaagtttggagaccgtggcaccttttttggtttctct
ctagctcttcaccagcagctttccccggagcctcagagctggatcctggtgggggcgccg
caggcagcggggcagggccggttgcggggcagtcgaccaggagccctgttcaggtgtccc
atcacgccagaggagtacgactgtgagagggtggatatcgatggagaagtgagtctggac
agagagagcaaagacaaccagtggctgggagttactgtcaaaagtcagggcattggaggg
aaggtggtgacctgcgctcacctgtacgagctcaggcaacgtgtcagtcaaccctcagag
actcgcgaccccatcggacgctgttacgtcctgagtgaggacctgaccgagcgagatgac
ctggacggaggcgagtggaagttctgcgagggtcggccgcagggacacgagcagttcggt
ttctgtcagcagggtctgtccgtcagtttcaccccggacaacaacttcatcctgtttggc
gctccgggaacatacaactggaaaggtgagatgcgcgtccagctcctaaaccagactctg
cttgacctcggtttctatgacgacgggccctacgaggtggcagatcagaaacagcttaat
gctcagctcatccctgtgccttaccacagttacctggggttttctgtggactcggccatg
gggataatgaaccttggagagctgacctttgtggcgggtgcaccccgggccaatcacaca
ggtgccgtgctgctgctgaagaaggacaatgtgtaccggctggtgccgcagcacattttc
tggggggaggagctggcgtcgtcgtttggctactcggtcgccacgacggatctgaacagg
gacggctggacagatctgattgttggagctcctaacttctttgaccgtaaggcagagatc
ggcggagctgtttacgtgtacttgaaccccttcggtcactgggacgatcaggctcggccg
atccgtctcaacgggacgtacgactccatgtttgggatgatggttgccagcgtcggagat
ctggaccaggacggatacggagatattgctgtgggagcgccgtttgatggagacggcaaa
gttttcatctacagaggctcagacgctggaattgagacaaaacctgctcaggtgttggat
ggtcgtgactttgatgtgagacgttttggttactccatctcaggtggtctggacatcgac
aataaccaatatccagacattgcagtgggatctttgaatgattctgtcgttctcttcagg
tctcgtccagtcattcatataatcagagaaatatctatagaccctcagtacatcgatctg
gagcagcacaactgtaaaggcagagatggagtctgcgtggaggtcaaggcctgcttcatc
ttcacagcccacccagaacactactcaccacacattaccctggtggtgcactttgaagct
gacacagagcgcaggaagttgggcctcccgcaccgcgtcaccttcctgggccgcagctct
ttagagccggagtacattcagacggaagaagtggagcttcatcggcagcatcacccagcg
tgcaccaccgccgtcttccaactccacgagagcatccgtgacaaactgcgtcccatctca
ctggcaataacccatacgatcaagtccgtgccgccacgcagacactcgggtgccaagagg
ctggagaggctggcgcccatactgaatatttctccctctaatacactgcactctgaggtg
aacttcctgcgagaaggatgtggcgctgacaaaatctgccagagcaacctgaagctcagc
taccagtttggaacacgacccctgacctctgacctcttcactcctctgccaaaagatgag
gatgacgtgcaggtgttctccctgtcagaccagcggctggtggtgctggagctcaccgtc
accaacatgccctctgaccccctctaccctgaggaggacggagatgacgcccacgccgct
cagctgctcatctcccttccaaacactctgtcgtacgccggctccaggatcccaccacag
atgagatgtcaagcgaaccagaatggctctcaagtcgagtgtgaccttggaaacccggtc
aaacgagacacgaagctgaaattctccatcaacttgagcacatcaaacatcaccatcgag
accacggagttgacagcagatctctcactgacaacgatcagtgagcagccggacctgacc
cccatcacagcgttcgctaaagttgtgatagagctccctctgtctgtcagtgggctcgct
cgtcctcaccagctgttcttcagcggggcggtgaggggagagagcgccatgagcagtctg
gaggacgtcggcagccctgtggattttgagtttgtggtggctaatcccggacaagctctg
cagacgttcggctcggccttcctgaacatcatgtggccttacgagctgaccaatgagaag
tggctgctgtatcctgcgagcctgaagtttgagggtcacccagacacacagtgctccccc
accggggccctgaatcctctaaagctgcagagctcctcacctgcagagcttccacagttg
atcgaccacagggccgggagagcgcggcgctcgtacccagaggacgaaggtcaagtgatg
gcaaaaggcaacgtgggacgaaccaccccggcggtggcagcgtcagagagacgcaagtcg
ctcaaactggactgtctcctgggatcggcacgttgtgtcctgttccagtgtcctctgcac
agcttctctggtcaggctgtcctcaaaatccacgccaggctgtggaacagcagtttcata
gaggagttccaggccgtcagcgccctggagctgctggtcagagccaacatcactgtcaag
tccagcatcaagcacctggtcctgaaggatgctgctgcacaggtcccagtgatgatctac
cctgaacctggtctggcggatcagtactggatcccctggtggatcatcctcatagctgta
ctggcaggcatcctgctgctgactctgctggtctgcatactgtggaagtgtggtttcttc
cgacgggcccactacaaagacaaactgcctcagtaccacgcggtgaagattcctcgcgag
gaccggccacagttccagactgagaagtcaggagttgtccataaaaaggaatgggccacg
cactggagcgacgggacctcgtaa
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