Lates calcarifer (barramundi perch): 108891246
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Entry
108891246 CDS
T04895
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog isoform X1
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108891246
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Others
EARP complex
108891246
Endosome - Golgi transport
Tethering complex
GARP complex
108891246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
DUF3440
MscS_porin
Motif
Other DBs
NCBI-GeneID:
108891246
NCBI-ProteinID:
XP_018543875
UniProt:
A0A4W6F164
LinkDB
All DBs
Position
LG3:complement(22182337..22189792)
Genome browser
AA seq
724 aa
AA seq
DB search
MAEGTTAAVGAGLDVNTAGNPTEIAMAYLQDEKTEGEISNLNLGELDLTTDEFILDEVDI
HIQANLEDDLVKEALKTGVDLRQYSKQVEAELQRIEQASIKDYIKESQNIALLHNQITAC
DSILERMEGMLSGFQSDLSSISSEIQTLQQQSVSMNVRLKNRQAVRSHLSQLVDELVVPG
AMISTILDSPVTEQEFLEQLHELNNKINFAKELSFRETLACSDIQDIVDRLKLKAVSKIR
EFILQKIYSFRKPMTNYQIPQNTLLKYRFFYQFLLANERTVAKEIRDEYVDTMSKIYYSY
FKSYSGRLLKVQYEEVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTLGQRGAILSPAEL
EGPILVPHTAQRGDSRYPYETLFRSQHYALLDNGCREYLFLSDFFMVAGNSALDLFNSIM
GKTLSMFLKSMSTYVSDCYDSIAIFLCIHIILRFRAITAKRNIPALDKYWEAVLELLWPR
FELILEMNIHSIRNTDPQKLGVLDTRPHYITRRYAEFSSAIVSINQTFPNERTNALLGQL
QVEVENFVLKMAAEFPSRRDQLIFLINNYDMMLGVLMERAADDSKEVEGFQQLLLARTQE
FIEEILSPPFGGMIAFVKEAEALMEKGQLDRLKNEEARITQLVRGFSSTWKQSVESMSQD
VMRSFTNFKNGTSIIQGALTQLIQYYHGFHKILNQPTFRSLAVRSELINLHHLMVEVKKH
KPNF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcggagggaactacagcagctgttggagctggcctcgatgtaaacacagctggaaac
ccaacagaaatcgccatggcttatttacaagacgagaagactgaaggagagatctctaac
ctgaacctgggagaactggacctcaccaccgatgagtttatcctggatgaagtggacatt
cacatccaggccaatctggaggatgacctcgtgaaggaggcgctcaaaacgggtgtcgac
ctcaggcagtactccaaacaggtggaggcagagctgcagaggatcgaacaggcctccatc
aaagactacatcaaggagagtcagaacatcgctctcctgcacaaccagatcaccgcctgt
gattccatactggagcgtatggagggaatgctgagcggcttccagagcgacctgtcctcc
atcagcagtgagatccagactctgcagcagcagtcggtcagcatgaacgtccggctgaag
aacaggcaggccgtgcgcagccacctcagccagctggtggacgagctggtggtgcccgga
gccatgatctccaccatcctggacagccctgtgacggagcaggagttcctggagcagctc
cacgagctcaacaacaagatcaactttgccaaagagctgagcttcagagagacgctggcc
tgctccgacatccaggacatcgtggaccgcctcaaactcaaggctgtttcaaagatcaga
gagttcattctccagaagatctactccttcaggaagccgatgaccaactatcagatacca
cagaacacgctgctgaagtacagatttttctaccagttcctcttggccaatgagaggacg
gttgcaaaagagatccgagacgagtacgtggacacgatgagtaaaatctactacagctac
ttcaaatcgtacagcggcaggctgctcaaagtgcagtacgaggaggtggcagacaaagac
gacctgatgggggtagaagacacagccaagaaaggtttcttctccaaaccgtctctgaag
agcaggaacaccatcttcactctgggccagaggggggccatactgagtcctgctgagctg
gaggggccgatcctggttccacatacagctcagagaggagacagcaggtatccgtatgag
acgctgttccgcagccagcactacgctctgctggacaacggctgcagagaatacctcttc
ctgtcagacttcttcatggtggcaggaaactctgcgctcgacctcttcaacagcatcatg
ggaaaaactctcagcatgttcctgaagagtatgtccacgtacgtgtccgactgctacgac
agcatcgccatcttcctgtgcatccacatcatcctcaggtttagagccatcaccgccaag
aggaacatccccgctctcgacaagtactgggaggctgtgttggagctgctgtggccgagg
ttcgagctgatcctggagatgaacatccacagcatcaggaacacagacccccagaaactg
ggagtgctggacaccaggccgcactacatcactcgtcgttacgcagagttctcgtcagcg
atcgtcagcatcaatcagacgtttcccaacgagagaaccaacgctctgctgggacagctg
caggttgaggtggaaaactttgtgctgaagatggcggcggagtttccctccaggagagac
cagctcatcttcctcatcaacaactacgacatgatgctgggtgtcctcatggagagggcg
gcagacgacagtaaagaggtggaaggtttccagcagctgctcctggccagaactcaggag
tttatcgaggagattttgtctccccccttcggagggatgatcgccttcgtgaaggaggcc
gaggcgctgatggagaaagggcagctggaccgactgaagaacgaagaggctcggatcact
cagctggttcgggggttttccagtacgtggaaacagtcggtggagtcgatgagtcaggac
gtcatgaggtctttcaccaacttcaaaaatggaaccagcatcattcagggcgctctgacc
cagctgatccagtactaccacggcttccacaagatcctgaaccagccgacgttccgcagc
ctggccgtccgctccgagctcatcaacctgcaccacctcatggtcgaggtcaagaagcac
aagcccaacttctaa
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