Lates calcarifer (barramundi perch): 108891320
Help
Entry
108891320 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108891320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108891320
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108891320
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108891320
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108891320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
108891320
NCBI-ProteinID:
XP_050923661
UniProt:
A0AAJ8B0G0
LinkDB
All DBs
Position
Unknown
AA seq
1611 aa
AA seq
DB search
MDCLLISGYGIDKAGVGFPGSPSSKMDDNAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNPK
FLKQPAAPPAPAPAPTPAPAPAPAPPAAAAAAPPVITQSSLTQEQLIRQQLLAKQKQLLE
LQQKKIELELEQTKAQLAGGFVLPTPAGVSAPAAPSAAAKPITQSTPVVRPWIPPQTQSD
TKPLATRDPRLNRPGPAAPPHPKEQPAGKKDSPPATGSPALTPEKRPSEKSTRLEKTRVQ
RKEAQEEKPKSKSPSPMAKSVQSKNKQAEAEVQKSADGTKKDPRLRKRTQDKSGEAKDDE
LKEKKRCSDKKEREEASQGAEPQRFNRGKLVNGSVTKHDREGSADRLEFKTGGNARTHAR
KRXRSRSRSRSPTSSPKRKDRRSPKGRARSSSPSPSPSHKAGKPRRVRADEPPHGKPGRE
DRLTAKKNQSESRRSKRPSETRHSDSRDSHSPRSHDGGGGKEAKEAPHRWRSGWEENKHV
KMSDDSHVKPGPQRHKPYSTPTRPTTPRTPKHRLSVDANLQIPEVLNSASKKDLLRRASK
RLESGEISQEDFLNMAHQIKHFFQYQEEKLQRSESWDDSGDFPAKKQPLPLTAPPSSSSQ
PRSHDGMDPAELSYYEHKSKLRKTQVTHRVAGEEWEAEEPLEDGEDVGQGEKAGAGRPPP
HKYNRAPRDRPGERRSKERDEPRPPPGPMIEEYNHGKVFPTLKALPGLRFRKRADPRESS
EREWNSPLTERQRYDEREEQKSGYDAPRRYDSRHPDPRRLEGPLPAGTVVHRNCPSPAGL
DPPAPRFERERLSPLHQKDSAEMSPIPRFESPNSEHSDDGPLNLDVAPHHPHPPPPPKSI
LKPSRGGPLSSVRQHSNSPGHTPPHDGGHLPSRYDGPEHMAPPRPHPPGWYDDPARFDGP
HHQGPGRFDGGPPHHNMPERFDGPDGPHMAHGPMRGGDGMGRFDGPPHPQGPGRFDGPMG
QQPAVRFGDXGPGPGHFEGPMQRFEPPRRFDNSMGPGPGPXGLQQQRPMRFEGPPNQMGP
MRFEGPGRFEGPASPVPGTTCPTRVGPALRRPSRAAGPPRFPPQHNMQAPLRPMAPPMYD
NPMAPSRXLRHDPQRFPDSMNPQFPAGPMAFPQAGNFNMQPAPPFSQPGPAPFYNPAAPA
VGMQQPVNLMNMNQPFLPQNPVPFTPQGPQVVPPENHFGQVDVNDLLSKLISNGIIKPSQ
PDAAPAASTAASSVAPAAPPXTEEEEEEEQEVEEGDVPDLTSFSIDDMKQRYESVVTKLY
SGNQCCLCSMRFTAAQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLTDWIEFEEIA
DLEERAKSQFFEKENEEEVQKNQAAAKEKEFQSVRATKDQVGESCEICQEPFETYWVEEE
EDWFLKNAIRVDDKNFHPSCFEDYKNTSSYLDITPSPNKLLLDHPLSAFVKTEQEEEGEE
ASTSCAIAAAAAAAASVKQEVASEAVELPDVKKEEEQEVLTEEVQSQESKA
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgttgatcagtggttatggtattgataaggctggtgtaggtttccccggg
tcgccgagctcaaagatggacgacaacgcggcgagggaagacgcctgccgagagtaccag
tcctcgctggaagacctgacattcaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgcaattattgaagcacaaataagc
aaggccccagctgccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggacgaaaacactagaaagagtctgttcaagctgcggtcgacgtgggac
gatgtgttcccgctgaagaaactgtacgctctggacgtccgggtcaactctgtggacccg
gcctggcccatcaagccgttgccgcccaccgtcaacgccagcatccacgtcaaccccaag
ttcctaaaacagccggcagcacctcctgctcctgctccggccccaaccccggctcctgca
cctgccccagcacccccggcagcggcagcggcggcgccccccgtcatcacacagtcgagc
ctgacccaggagcagctgatccggcagcagctcctggccaaacagaagcagcttctggag
ctgcagcagaagaagatcgagctggagctggagcagaccaaagctcagctggctggtgga
tttgtgttaccaacaccggctggtgtctccgccccggcagcaccgagtgcagccgcgaag
cccatcacccagtccactcccgtggtccgaccttggatcccccctcagactcagtccgac
accaaacccttggcgaccagagacccccgtctgaaccgccccggccctgccgcgcccccc
catcccaaagaacagcctgctgggaaaaaagacagcccccctgcaacaggaagtcccgct
ctgactcctgagaaacgaccgtcagagaaatccacccggctggagaagaccagggtccag
aggaaggaggcgcaggaggagaagcccaagtccaagtctccgtctccgatggccaaaagt
gtccagagcaagaacaaacaggcggaggccgaggtgcagaagtcggccgacggcaccaag
aaagacccgaggctgaggaaacgcacacaggacaagagcggtgaggccaaagacgacgag
ctgaaggagaagaagaggtgcagcgataagaaggagagagaggaggcgtcgcaaggagcc
gagcctcaaaggttcaacagggggaagctggtgaacggctcggtgaccaaacatgaccgc
gagggctctgccgacaggctcgagttcaagaccggaggcaacgcccggacgcatgcccgg
aaacgcnaccgctcccgctccaggtcgcgctccccaacctcctccccaaagaggaaggac
aggaggtcgccgaagggccgagcccggagcagctcgccatccccttcaccctctcacaag
gcggggaaacctagaagagtccgcgccgacgagccgccacacggcaagcccggccgagag
gacagactcacggccaagaagaaccaatcagagagcaggaggtcgaagaggccgtcagag
accaggcactcagactccagagactctcactccccaaggagccacgacggaggaggaggc
aaggaggcgaaggaggctcctcaccgctggagaagtggctgggaggagaacaaacatgtg
aagatgtctgatgactctcacgtgaagcccggacctcagagacacaaaccctacagtacc
ccgactcgccccaccaccccccgaaccccgaagcaccgtctcagcgtagacgccaacctg
cagattcctgaagtcctcaactcggcctccaagaaggatctgctcagacgggccagtaaa
cgtctggagagcggcgagatctcccaggaggacttcctgaacatggcccaccagatcaaa
catttcttccagtatcaggaggagaagctgcagcgctcggagagctgggatgactccggc
gattttcccgccaagaagcagcctctgccgctcaccgcgccgccatcctcgtcatctcag
ccccgctcccacgacggcatggacccagcagagctgtcgtactacgagcacaagtccaag
ctgaggaagacgcaagtcacccaccgagtcgccggagaggagtgggaggcagaggagccg
ctggaggacggcgaggacgtggggcagggcgagaaggcgggcgctggacgcccaccaccg
cacaaatacaaccgggcgccgcgggacagaccaggtgaaagacggagtaaagagcgtgac
gagccacgacctccacccggccccatgatcgaggagtacaaccacggcaaagtgttcccc
actctgaaagctctgccgggccttcgcttcaggaagagagcagaccccagagagtccagt
gagagggagtggaactcgccactgaccgagcgccagcgttacgacgagcgcgaggagcag
aagagcgggtacgacgctccgcggaggtacgactccagacaccccgaccctcggaggctg
gaggggcccctgcccgccggcaccgtggtccacaggaactgtccgagtccggccggtctg
gaccctccagccccaaggttcgagcgcgagcgcctgtcgccgctgcaccagaaagactcg
gcggagatgagcccgatcccgcgcttcgagagccccaacagcgagcactcggacgacggg
cccctcaacctcgatgtcgccccgcatcaccctcacccaccccctccccccaaatccatc
ctcaagccgtcccgcggcggaccactgtcctccgtccgacagcacagcaactctccgggt
cacacgcctcctcatgacggaggacacctgccctccagatacgacgggcctgagcacatg
gccccccccagaccgcaccctccgggctggtacgacgacccggcgcggttcgacgggcct
caccaccagggccccggcaggttcgacggcggaccgcctcatcacaacatgccagagagg
ttcgacggccccgacggcccccatatggctcacggtccgatgaggggcggggatggtatg
gggaggtttgacggacccccccaccctcagggccccgggaggtttgatggacccatgggc
cagcagccagcggtgaggtttggggacncagggcctggaccgggacactttgagggaccg
atgcagcgcttcgaaccaccgcggcgcttcgataacagcatgggtcctggtcctggaccg
natggcttacagcagcagcgccccatgcgctttgagggcccccccaaccagatgggcccc
atgaggtttgagggccccggtcgcttcgagggcccggccagcccggtcccaggtacgaca
tgccccaccagggtgggccccgcacttcgacggcccagcagggcagccgggccccccagg
ttccctccccagcacaacatgcaggcccccttgaggccgatggccccgcccatgtacgat
aaccccatggcccccagcagannacttcggcatgacccccagcggttcccagactccatg
aaccctcagttccccgcggggccgatggcgttcccgcaggcaggaaacttcaacatgcag
ccggcgccacctttcagccagccgggccccgcccccttctacaaccctgctgcccccgcc
gtcggcatgcagcagccggtgaacctgatgaacatgaaccagccgttcctgcctcagaac
ccagtgcctttcactcctcagggtcctcaggtcgtccccccagagaaccacttcggtcag
gtcgacgtcaacgacctcctctccaaactcatctccaacggcatcatcaaaccgtcgcag
cctgacgccgcgcccgccgccagcaccgctgcgtcttcagtggctccagcagctccgccg
nngacagaggaggaggaagaggaggagcaggaggtggaggagggagacgtccccgacctc
accagcttcagcatcgacgacatgaaacagcggtatgagagcgtggtgacgaagctgtac
tcagggaaccagtgctgcctgtgcagcatgaggttcacggccgctcagaccgacatgtac
gccgaccacctggactggcacttcagacagaaccacgccggcaaggtcgccagcaagaag
gtcacacaccgccgctggtactacagcctgacggactggatcgagttcgaggagatcgcc
gacctggaggagcgagcaaagagccagttctttgagaaggagaacgaggaggaggtgcag
aagaaccaggcggcggccaaggagaaggagttccagagcgtcagagccaccaaggaccaa
gtgggcgagtcgtgtgaaatctgtcaggagccgtttgagacgtactgggtggaggaggag
gaggactggttcctgaagaacgccatcagggtcgacgacaagaacttccatccttcctgt
tttgaagattataaaaacacgtcgtcgtatctcgacatcacgccgtcgcctaacaagctg
ctcctcgaccacccgctgagcgccttcgtaaagaccgagcaggaggaggagggggaggag
gcgagcacttcctgcgccatcgccgccgccgctgccgccgccgcctcggtcaaacaggaa
gtggcgtcggaggcggtcgagcttcctgacgtgaagaaggaggaggagcaggaggtttta
acagaggaagtgcaatcacaggagagtaaagcgtaa
DBGET
integrated database retrieval system
