Lates calcarifer (barramundi perch): 108891356
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Entry
108891356 CDS
T04895
Name
(RefSeq) RING-type E3 ubiquitin-protein ligase PPIL2
KO
K10598
peptidyl-prolyl cis-trans isomerase-like 2 [EC:
5.2.1.8
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108891356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108891356
03110 Chaperones and folding catalysts [BR:
lcf03110
]
108891356
04121 Ubiquitin system [BR:
lcf04121
]
108891356
Enzymes [BR:
lcf01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.8 peptidylprolyl isomerase
108891356
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108891356
Complex C
U4/U6.U5 tri-SnRNP related factors
108891356
Other splicing related proteins
Minor spliceosome components
Minor spliceosome associated proteins
108891356
Chaperones and folding catalysts [BR:
lcf03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
108891356
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
U-box type E3
108891356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pro_isomerase
Rtf2
zf-NOSIP
V-set_CD47
Motif
Other DBs
NCBI-GeneID:
108891356
NCBI-ProteinID:
XP_018544012
UniProt:
A0AAJ7Q192
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All DBs
Position
LG13:complement(24323430..24346597)
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AA seq
526 aa
AA seq
DB search
MGKRQHQKDKMYITCTEYTNFYGGKRAEIPQANFRRLPFDHCSLSLQPFEYPVCTEDGVV
FDLLSIVPWIKKYGTNPISGEKLEAKSLIKLNFTKNNEGKYHCPVLYNVFTNNSHIVANK
VTGNVFSHEAVEQLNIKTKSFKDLLTDEPFTRKDLITLQDPTNLDKFNVSNFFHVKNNLK
VLDPDEEKAKQDPAYHLKSTNLETRETLAELYKDYKGDQLLASTMKEPEAKKTDKLNAAH
YSTGRVSASFTSTAMTPATTHEADAIADDTVRYQYVKKKGYVRLNTNKGELNLELHCDKV
PKAGENFIRLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGTGGESLWGKPFRDEFRPNLSH
TGRGVLSMANSGPNTNKSQFFITFRSCTYLDRKHTVFGRVVGGFETLTAMENVESDPKTD
KPKSEIKIISTTVFVNPYEEADAQIAAEREKEQQKQEEERQQASITLKKAKEEQAPKTFK
EGVGKYINPATIKRSAAEDESGPSTSGAAVAKKSKGKTGFGDFSSW
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggggaagcgacagcaccagaaagataaaatgtacatcacatgtacagagtacacgaac
ttttacggagggaaaagagcagaaatcccacaggcaaacttcagacggcttccgttcgac
cactgcagtttgtcccttcagccgtttgagtatcctgtctgcactgaggacggagtcgtc
tttgaccttctgagcatcgttccatggattaagaagtatggcactaatccgatctctgga
gagaaacttgaagcaaagtctctcatcaaactcaactttaccaagaacaacgagggaaag
tatcactgccccgttctctacaacgtcttcacaaataactctcacatcgttgccaacaag
gtcaccggcaacgtgttttctcatgaggctgtcgaacaactcaacattaaaaccaagagt
tttaaagatctgctgaccgacgaacccttcaccagaaaggacttaataacactgcaggat
cccacaaacctggataaattcaacgtttccaacttcttccatgttaaaaacaacctgaag
gtgttggatccagatgaggagaaggcgaagcaggacccggcgtaccacctgaagagcacc
aatctggagaccagggagacgttagctgagctgtacaaagactacaagggggatcagctc
ctggcgtccaccatgaaggagccggaggccaagaagacggacaagttaaacgctgctcac
tactccaccggcagagtttccgcctccttcacatccacggccatgacccctgcaacaaca
catgaagcagacgccatcgctgacgacaccgtgcgttaccagtacgtgaagaaaaaaggc
tacgtccgtctaaacaccaacaaaggagaactgaatctggagctacactgtgataaggtt
cccaaagccggagagaatttcatccgtctgtgtaaaaaaggatactacgacgggacgatc
ttccacaggtccatccggaatttcatgattcaaggaggggaccccacaggcaccggaaca
ggaggtgaatccctctgggggaaacctttcagggacgagtttcggccgaacctgtcccac
actggccggggcgtcctcagcatggcaaactctggtccgaacaccaacaagtcccagttc
ttcatcacattccggtcatgcacctacctcgatagaaagcacacagtatttggacgggtt
gtcggtggatttgagacactcacggccatggagaatgtggagagtgatcccaaaacagac
aaaccaaagtcggagatcaagatcatcagtacgactgtgttcgtcaacccatatgaagag
gctgatgctcagatcgcagcagagcgagaaaaggagcagcagaagcaggaggaggagagg
cagcaggccagcatcactctgaagaaagccaaggaggagcaggcgccaaagaccttcaaa
gaaggtgtggggaaatacatcaaccctgccacaataaaacgttcggctgctgaagatgaa
agtggaccgtccaccagcggagcagcggtggccaagaagtccaaaggcaagactggcttc
ggagacttcagctcctggtag
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