Lates calcarifer (barramundi perch): 108891405
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Entry
108891405 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: estrogen receptor 2b
KO
K08551
estrogen receptor beta
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
108891405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108891405
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108891405
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 estrogen receptor-like
108891405
Nuclear receptors [BR:
lcf03310
]
3. Estrogen like
3A. Estrogen receptor
108891405
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GFIT
Motif
Pfam:
zf-C4
Hormone_recep
ERbeta_N
ANTH
Motif
Other DBs
NCBI-GeneID:
108891405
NCBI-ProteinID:
XP_050934205
UniProt:
A0AAJ8BJH6
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Position
LG19:22935430..22962239
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AA seq
655 aa
AA seq
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MASSPELDADTLPLLQLQEVDSSKTSDRPNSPGLLPTVYSPPLGMDNHTVCIPSPYTDSS
HEYNHGHGPLTFYSPPVLSYTRPPITDSQSSLCSPLSPSAFWPSHSHTNVPSLTLRCPQP
LVYNEPSPHAPWLEPKPHNINPSSSIISCNKLLVKRSEEEVEGVNSSSCSSAVGKADMHF
CAVCHDYASGYHYGVWSCEGCKAFFKRSIQGHNDYICPATNQCTIDKNRRKSCQACRLRK
CYEVGMMKCGMRRERCSYRGARHRRGGLQPRDPTGRSLVRGGVASRAQRHLHMEVPLTPL
TLPQGNHTHHSTMSPEEFISRIMEAEPPEIYLMEDLKKPFTEASMMMSLTNLADKELVLM
ISWAKKIPGFLELSLTDQIHLLKCCWLEILMLGLMWRSVDHPGKLIFSPDFKLNREEGQC
VEGIMEIFDMLLAATSRFRELKLQREEYVCLKAMILLNSNLCTSSPQTAEELESRNKLLR
LLDSVIDALVWAISKLGLSTQQQTLRLGHLTMLLSHIRHVSNKGMDHLSTMKRKNVVLVY
DLLLEMLDANTSSSSSQTSSSPTSDLYSDQHQYPLPPSHLQPGSDQTAVTDHTTVPPEAQ
ILDTHLQSMPPAHMDGSSYIHPEQWSLDSQDAGPLLDPTDCIIPDRVVMETTLEG
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcccctgagctggatgctgacacattaccgctgctacagctccaggaggtg
gactccagtaaaacctcagacaggccgaactccccgggactcctccccactgtgtacagc
cctccgctgggcatggacaaccacaccgtctgcatcccctctccatacacagacagcagc
catgagtacaaccacggacatggacctctgactttctacagcccgcctgtgctcagctac
accagaccgcccatcactgacagccagtcatctctgtgcagccccctcagcccgtcagcc
ttttggccctcccacagtcacaccaacgtgccttcactgactctgcgctgccctcagcct
ctcgtctacaacgaacccagcccgcatgcaccctggctggagcccaaaccccacaacatc
aaccccagcagctccatcatcagctgtaacaagctgctggtgaagagatcagaggaagaa
gtggaaggagtgaactcttcctcgtgttcatccgcagtagggaaagctgacatgcacttc
tgtgccgtgtgccacgactacgcctccgggtaccactatggtgtgtggtcctgcgagggc
tgcaaggcctttttcaagaggagtatccaaggacacaatgactacatctgccccgccaca
aatcaatgcactattgacaagaaccgacgtaaaagctgccaggcctgccgcctacgtaaa
tgctatgaagtgggcatgatgaagtgtggtatgaggcgtgaacgctgcagctatcgagga
gctcggcatcgtcgtggtggacttcagcctcgggatccgacaggcaggagtttggtcagg
ggtggggtggcttctcgagctcagcggcacctccacatggaggtgcctctcaccccactc
accctccctcaggggaaccacacacaccactcaaccatgagccctgaggagttcatctcc
cgcatcatggaggcagagcctcctgagatctacctcatggaggacctgaagaagcccttt
actgaggccagcatgatgatgtccctcaccaacctggcagacaaggaactggtcctcatg
atcagctgggctaaaaagattcctggctttttagagctgagtctcacggatcagatccac
ctgctgaagtgctgctggctggagattctgatgctgggcctgatgtggaggtcggtggac
catcctggaaaactcatcttctcccctgacttcaaactcaacagggaggagggacagtgt
gtggagggcatcatggagattttcgacatgctgctggcagccacctctcgttttcgtgag
ctgaagcttcagagggaggagtatgtctgtctgaaggccatgatcctcctcaactccaat
ctgtgtacgagttcccctcagacggccgaggagctggagagcaggaacaagctgctgcgt
ctgctggactctgtgatcgatgctttggtctgggccatctccaaactgggcctgtccacc
cagcagcagactctgcgcctcggacacctcaccatgctgctctcccacatccgccacgtc
agtaacaaaggcatggaccacctctccaccatgaagaggaagaacgtggtgctggtgtac
gacctcctcctggagatgttggacgccaacacgtccagcagcagcagccaaacctcgtcc
tccccgacctccgacctttactctgaccagcaccagtaccccctgcctccatctcacctg
cagccaggctcagaccagaccgccgtcacagaccacaccactgtgcctcctgaagctcag
atcctggacacacacctgcagtctatgcccccggctcacatggacggcagcagttacatc
catccggagcagtggtccctggattcacaggatgccggtcccctgctggatccaacagac
tgcatcatccccgatcgagttgtcatggaaacgaccctggagggatga
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