Lates calcarifer (barramundi perch): 108891553
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Entry
108891553 CDS
T04895
Symbol
gsdmeb
Name
(RefSeq) gasdermin Eb
KO
K22146
gasdermin-E
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
108891553 (gsdmeb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108891553 (gsdmeb)
Transporters [BR:
lcf02000
]
Other transporters
Pores ion channels [TC:
1
]
108891553 (gsdmeb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Gasdermin
Gasdermin_C
DUF5958
DUF6456
CorA
Motif
Other DBs
NCBI-GeneID:
108891553
NCBI-ProteinID:
XP_018544241
UniProt:
A0A4W6DK10
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All DBs
Position
LG15:complement(21767765..21772016)
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AA seq
476 aa
AA seq
DB search
MFATATRNFVEEVDHGGLLIPVCSLNDTIALLTVVVKRKRFWLWQKPKYLPTDFTLNDLL
AGDPPIEPVTTETDFITYNGTYGDNIQGTMDANFVHSNVNLEGKDSSKLQSSFGSLKKEE
MNVQRLLQDSKGRVLDMTHCLIQQTKEKHKQVFGIVKERIVTTKPCSVIEEVQQGGQCGG
ALSLCGPKNPKVSLKENGSLSKDSNVTMEIPTHTTIAYALIELEIKHDGCFELCLMSDTT
GGFEVDSPVTKGVLGVSGALAHTSENSCLRQDLEQLNDHFQLLSSLPGATRSSLLQQLTE
VMQHRAAVSTLQNALDQICLDKSPAPGDVSMTESQKQNIQAILDLVQQSGQVESAQTGQT
TSVLTALHLISSALDEMTNDCLAVLGTCCSHTVLQAMELLVQCITSGKGELPLSSAGLAA
LTGDAYEKTVHLFGSFSVFLKKDGDTVKTELNQEPGNLPLVLCIAVRGLASLALCV
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccactgctaccagaaattttgtggaggaggtggatcatggaggtctgctgatc
ccagtgtgcagcctgaatgacactattgctctcctgacagtggtggtgaagcgcaagcgt
ttctggttgtggcagaagcccaagtatcttcccactgattttaccctcaatgatttactc
gcaggagacccccctatagagccagttaccacggagacagactttatcacatataatggg
acatatggagacaacattcagggaactatggacgcaaattttgtccactccaatgtgaat
ctggagggtaaagactcttccaaactgcagtcatcctttggcagtttgaagaaagaagaa
atgaacgtgcagaggttactgcaagactccaaaggcagggtcctggacatgacccattgt
ctgatccagcagacgaaggagaagcacaaacaggtatttgggattgtgaaggagcgtatt
gtgaccactaagccctgttcagtcatagaggaggtgcagcagggtggacagtgcggagga
gcactgagcctctgcgggccgaagaaccctaaggtttcattgaaagaaaatgggagcctt
agtaaagacagtaatgttaccatggagattcccacccatactaccattgcctatgccctc
atagaactagaaatcaaacatgatggatgctttgagttgtgtctaatgtcagacaccact
ggaggttttgaagtagacagccctgttacgaaaggagtgttgggtgtctcaggagctctt
gcgcacacttctgaaaatagctgtctccgacaagacctggagcaactcaacgatcacttc
cagctgctgtcatctcttcctggcgccacaaggtcctctctgctccagcagttaacagaa
gttatgcagcaccgagcagccgtcagcactcttcagaatgcgctggaccagatatgcctg
gataagagtcctgcccctggtgatgtttcaatgacagagtctcaaaaacaaaacatccaa
gcaatcctggaccttgtgcagcagtctggtcaagtggagtcggctcagacgggccagacc
acatcagtactcacagcccttcacctcattagcagcgccttggatgagatgacaaatgac
tgtctggctgtcttgggaacatgctgcagccacacagtgttgcaggcaatggagcttttg
gtgcagtgcatcacgtcaggaaagggggagttgcctctgagcagcgcaggcctggctgct
ctaacaggtgatgcctatgaaaagactgtgcatctgtttgggtccttcagtgtgttcctg
aagaaagacggggacacagtgaagacagaacttaaccaagagccaggaaaccttcctctg
gttctgtgcatcgctgtcagaggtcttgcctctttagccctctgtgtctga
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