Lates calcarifer (barramundi perch): 108891562
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Entry
108891562 CDS
T04895
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108891562
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
108891562
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
108891562
NCBI-ProteinID:
XP_018544251
UniProt:
A0A4W6FXL7
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Position
LG7_1:640988..653990
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AA seq
592 aa
AA seq
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MDDEHTAGFREPCAQCSAVDWGVSDEGRFYCRSCHNVIERTREVVETTFAPGSTRVSTIG
RGSRNKRPEGGRQWMICEGFQFILRNQADALLRLGVTPHFKDQVLLQLWRLYLQRSRQAY
TNDPVRSSRFKVRGLDSDSDSMAESSVKSASETDGEANLSSTVGSNAASSSDWSQCSGSV
DVVTYLSARLRRSRGLMSMKKTLALIHLGLVWSQEPLTLSDLLRLVNEGHVPYLNAYEDL
PDEMRLDGRDAVIFRVDSVPSHRAVHTEAQDLALYLQLPAFPPISRKSLLHPALLSVRYL
TDANLPDELHPWVCSLMERAGMTDQTFHTFDSTTRPILPRYDVQSAAVIIVTMKVIFGLD
DHTEWDLSNEVGVQDDSEDVFNLRRWYRLMQAALIKAQQKRDHHIARKQWKAKKPLYLNR
KMKTTVMKKKRTAEQVQICFKKLSSRLVGIRDCEPSSFRFCWGDEDGADGPSLHHKKLDK
VVTPKRNILTPSNSTYWHPALQACDPRKCRSHYSEVEATLPRSFVWMLQLFSFLLDVKPA
YLYEEVLTVERRVFGGKTPLNGNVRRKGRKTRTEARTETRSRSRSDTRTPQR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgaacacacggccggcttcagggagccctgtgctcagtgttcggcggtggac
tggggagtttcagacgaaggtcgtttctactgcagatcctgtcacaacgtcatcgagaga
accagagaggtggtggagacgaccttcgctcccggctccacccgggtctccaccatcggc
agaggatccaggaacaagaggccggagggcggtcgtcagtggatgatctgcgaaggtttc
cagttcatcctgaggaaccaggccgacgctctgctcagactcggcgtcactccacatttt
aaggaccaggtgttgctgcagctgtggagactttacctgcagaggagtcgacaggcgtac
accaacgacccggtgaggagctccaggtttaaagtgagaggtctggactcggactcggac
agtatggccgagtcatcagtgaagtctgccagcgagacggatggagaggcaaatctgtca
agcaccgtcggatctaatgcagcaagctccagtgattggtcgcagtgctcgggctcggtg
gacgtcgtcacctacctgtcggctcggctgaggcggagtcgtggtctgatgagcatgaag
aagactctggctctgatccacctcggtctggtctggagtcaggagccgctgacactcagt
gacctgctcaggctggtgaacgaaggccacgtcccatacctgaacgcctacgaggatctg
cccgacgagatgaggctcgacggcagagacgctgtcatcttcagagttgacagcgtcccg
tcccaccgggcggtgcacaccgaggcccaggatctggctctgtacctgcagcttcctgct
tttcctccaatcagccgtaagagtctgctgcacccagcgctgctcagcgtgcgctacctg
accgatgccaacctgcccgacgagctccacccgtgggtctgcagcctgatggagcgtgcc
ggtatgacggatcaaacgttccacacattcgactccacaacccgtcctatcctgccgcgg
tacgacgtccagagcgccgccgtcatcatcgtcaccatgaaggtcatcttcggcctggac
gaccacacagagtgggatttatccaacgaggttggagtccaggacgactcagaggatgtg
tttaacctgaggaggtggtaccgactgatgcaggccgctctgatcaaagctcagcagaag
agagaccaccacatcgccaggaaacagtggaaggcaaagaaacctctttacctgaacagg
aagatgaaaaccactgtgatgaaaaagaaaaggacagcagaacaggttcagatctgcttc
aagaagctgtcttcccgcctggtggggatccgggactgtgagccgtccagcttcaggttc
tgctggggggatgaggacggagcggacggtcccagtctgcaccacaagaaactggacaag
gtcgtgaccccgaaacgcaacatcttgactccctctaactccacgtattggcacccggcg
ctccaagcctgcgatccccggaagtgcaggagtcattactcggaggtggaggcaacgttg
cctcggtcgtttgtctggatgctgcagctcttctccttcctgctcgacgtgaagccggcc
tacctgtacgaggaggtgctgaccgtggagagacgagtcttcggcggcaaaacgcccttg
aacggaaatgtgaggaggaaggggaggaagaccaggaccgaggctaggactgagaccagg
agcaggagccggagtgacaccaggacgccacagagatga
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