Lates calcarifer (barramundi perch): 108891574
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Entry
108891574 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04137
Mitophagy - animal
lcf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108891574
04120 Ubiquitin mediated proteolysis
108891574
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
108891574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108891574
04121 Ubiquitin system [BR:
lcf04121
]
108891574
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108891574
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
108891574
Membrane trafficking [BR:
lcf04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
108891574
Aggrephagy
Other aggrephagy associated proteins
108891574
Xenophagy
Other xenophagy associated proteins
108891574
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
108891574
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
108891574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
108891574
NCBI-ProteinID:
XP_018544268
UniProt:
A0AAJ7Q1L6
LinkDB
All DBs
Position
Unknown
AA seq
477 aa
AA seq
DB search
MIESPDHLTCHLCVSSVFVRYNLGPGVAVELQEEASVAELKEVVGNQQGVRPEQLRVLFA
GRELQSSATLQGCNLPEQSTIHVVLPPSGSSSSRLLLLQERLSLVGKEEQDSLTRLDLSS
SRLPTTSTGLAVILEGSDGGGGDGGTEEAQTTGVKGVHTCSTFFVYCKSCRSVQPGKLRV
RCQSCKQTTLTLSRGPSCWDDVLLPGRIHGICQSDGCHGNEAEFFMKCASHPTSDDDLSV
ALDLIMTNTRDVPCIACTDIIDVVLVFQCLERHVICLDCFRRYCQARLDERQFVHHAVIG
YSLPCAAGCVNSLIKELHHFRVLGEEQYGRYLQYGAEECLLMIGGLMCPSPGCGAGLLPS
DGSRRVECDRRAGCGFVFCRDCRGRYHEGACQTQPAPPTDQASQSFVVGEEASLRGRWDQ
ASQLLIQESTKRCPQCSVPVERNGGCMHMQCPLCRAEWCWICGVSWNRECMGNHWFG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagtcacctgaccacctgacctgtcacctgtgtgtctcctcagtgtttgtgcgg
tataacctggggccaggggtggccgtggagctgcaggaggaggcaagtgtggccgagctg
aaggaggtggtggggaatcagcagggagtcagaccggagcagctcagggttctgtttgct
gggagggagctgcagagctctgccacgctacagggttgtaacctcccggagcagagtacc
atccatgtcgtcctccctccttcaggatcctcctcctcccggctgctcctcctgcaggag
cgtctgtctctggttgggaaggaggagcaggacagcctgaccaggctggacctcagctcc
tcacgcctccccaccacctccaccggcctggctgtgatcctggaggggagcgatggagga
ggaggtgacggaggaacagaggaggcgcagactacaggagtgaaaggtgtgcatacctgc
agtactttcttcgtgtactgtaagagctgcaggtcggttcaacctggaaaactgagagtt
cgctgtcagagctgcaaacagacaacactgactctgagcagaggtccgtcctgttgggat
gacgtcctcctccctggtcgtatccatggcatctgtcaatcagatggttgtcatggtaat
gaagcggagttcttcatgaagtgtgcgtcccacccaacctcagatgacgacctttctgtg
gccctcgacctcatcatgaccaacaccagagacgtgccctgcatcgcctgcactgacatc
atagacgtggtcttggtcttccagtgtttggagcgtcatgtgatctgtctggactgtttc
cgtcggtactgtcaggcccgactggatgagcgacagtttgttcatcacgctgtgattgga
tactctctgccctgtgcagccggctgcgtcaactctctaatcaaagagcttcatcacttc
agagtgttgggggaggaacagtatggtcggtatctgcagtacggggctgaggagtgcctg
ctgatgataggaggactgatgtgtccatcacctggttgtggggcggggcttctcccctca
gacggcagcaggagggtggagtgtgacagacgtgcgggctgtggctttgtcttctgcaga
gactgcagagggcgctaccacgagggggcgtgtcagacgcagccagccccgcccacagac
caggcctcacagagttttgtggtgggggaggaagcgtctcttagagggaggtgggatcag
gcgtctcagctcctcatccaagagtcgaccaaacgctgccctcagtgttcagttcctgtg
gagagaaacggtggctgcatgcacatgcagtgtcctctgtgcagagcggagtggtgctgg
atctgtggagtctcctggaacagagaatgtatgggaaaccactggtttggataa
DBGET
integrated database retrieval system
