Lates calcarifer (barramundi perch): 108891698
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Entry
108891698 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108891698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108891698
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108891698
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108891698
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
DUF4774
RING_XB3-XBAT31
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
108891698
NCBI-ProteinID:
XP_018544489
UniProt:
A0AAJ7Q1W3
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Position
LG15:21673298..21675615
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AA seq
413 aa
AA seq
DB search
MAMSPSSRRCGSLSPEGILREIQVNLLECKVCFEKFCTQQRERRPQNLSCGHVLCLECIR
ALSHPLLRKLECPFCRQLCSVDSTSHCQVLSDLQELLLSRTPIFSAPPHRAKGGFSEAAG
LTSTGLHLCTAFGGWGTLINPTGIAVLGSSGTAVVVHDGEKGVVVFSPQGKKLHSFGQRG
QASGEICYPVDVAVTPCGYVLVTDAGDKAVKVFTSRGNHVLTVKDSFQMPWGVDTDSCGH
IVVSDIQAGMLCHVQVDYAHGVILQHHTPISDLQHPKAVACCRVTGNTAVMEHLTDDTHP
PERHQHTRLKVFTKDFHLLYQTDTFSLTLQSTVRLDMSSVAFDRDGNVIVIDSKQGMVWS
LGKLQNSPVLTPLVGDLIRPVGLVSLNNMLIILDGGDHAVKFYSATSDTGPVK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggccatgagtcccagttcccgacgctgtggcagcctgagtcctgaggggatcctgaga
gagatccaggtcaatttgctggagtgtaaagtttgcttcgagaagttctgcactcagcag
agggagcgcagaccacagaacctttcctgtggccatgtactctgtctggaatgcatcaga
gctctgtcccaccctctcctgaggaagctggagtgcccgttctgtcgacagctgtgcagt
gttgacagcacctcccactgccaggttcttagtgacctccaggagctactgttgtctcgg
actcccattttctctgctcctcctcacagggcaaaaggaggctttagtgaggctgcaggt
ctgacatcaacaggtctgcacctctgcacagcttttggcggctgggggactcttatcaac
cctactgggatagctgttttaggctcctctgggacagcagtggtggtgcatgatggagag
aagggggtggtggtgttcagtccccaaggaaagaagctgcacagttttgggcaaagagga
caggccagtggggagatctgttacccagtggatgtggcggtgactccttgtggttacgtg
ctggtgactgatgcaggggataaagctgtgaaggttttcacctccagagggaaccacgtg
ttgacagtcaaggattctttccagatgccctggggtgtagacacagacagctgtgggcac
atcgtggtctcagacatccaggctggcatgctgtgtcatgtacaagtggactatgctcat
ggtgttattctgcagcatcatacacccatttctgaccttcagcatccaaaagctgtggcc
tgctgtcgagtgaccgggaacactgcagtgatggaacacttaaccgatgacacacatcca
ccagagaggcaccaacacacaaggctgaaagtgtttaccaaagacttccacctcctttat
cagacagacactttcagcctgaccctgcagtccacagtgaggctggacatgtcaagtgtg
gcttttgacagagatggaaatgtgattgtgattgattctaaacaggggatggtctggagt
ttagggaagctccagaacagcccggtcttgactcctcttgtgggagaccttatccgccca
gttggactggtgtcactgaacaacatgctcatcatcctggatggtggagaccatgcagta
aagttttattctgctacatctgatactggacctgtgaagtag
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