Lates calcarifer (barramundi perch): 108891746
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Entry
108891746 CDS
T04895
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108891746 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108891746 (lamb1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
ATG17_like
Laminin_II
Motif
Other DBs
NCBI-GeneID:
108891746
NCBI-ProteinID:
XP_018544570
UniProt:
A0AAJ7Q204
LinkDB
All DBs
Position
LG10:complement(18845..48580)
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AA seq
1799 aa
AA seq
DB search
MLELQLAVLLALQVCTCAQEGGASVGGDLDDVGLPELSDVCTEGSCYPATGDLLIGRAHQ
LSSTSTCGLNRPEPFCIVSHLQEEKKCFVCDSAAAYDELTNHTSSHRIENVVTTFAPNRL
KTWWQSENGLENVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKTWQVYRYFAY
DCETSFSHVSQGPMQKVDDVICDSRYSDIEPSTEGEVIFRVLDPAFRIDDPYSPRIQNML
KITNLRVKFTKLHTLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPIQGAGQ
TREGMVHGHCMCNHNTKGLNCEQCQDFYHDLPWRPAEGRNTNACKKCNCNQHSDSCHFDM
AVFMASGNVSGGVCDNCQHNTAGHNCEQCKPFYYQHPERDVRDPNICQACNCDPLGSLNG
GTCDRMTDVRAGLIAGQCRCKVNVEGERCERCKQAYYGLSDDPEGCKACTCSPVGTVPGG
NPCDSETGSCFCKRLVTGQDCDQCVSEHWGLSNDMDGCRPCDCDLGGAVNNQCDQVSGQC
ICRDHMFGRRCDQVESGFYFIALDHYTYEAEDAKFGPGVTVVPRPHPQDRSPTWTGIGLV
NVPEGAFLEFSVDNIPHSMEYDIIIRYEPQLPDQWEEVLMTVMRPGPVRADSRCINTVPD
DDNQMISLHPGSRYVVLPRPVCFESGLNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHC
KNLDIFTASEGGDSSGNSGWETFQRYRCLENSQSVVKTPMTDICRNFIFSISAMLHQGAK
ECQCDPQGSLSTVCDPSGGQCQCRSNVVGRNCDRCAPATFQFGPNGCRACACDPQGSQSQ
FCDQLTGQCVCVPGAYGRQCDRCLPGHWGFPACRHCSCNGHADSCDPNTGYCIDCKDHST
GHSCDRCLDGYYGDPVLGSGDHCRPCMCPDGPGSQRQFAGSCYRSDNSQQAICVCNTGYR
GARCDECSPGYYGNPGEPGGQCQPCQCNSNIDMLDPESCDAQTGECLRCLYHSEGVACHS
CKLGYYGNALLQDCRKCVCNQLGSDPSSCPSSGDCHCDRSSGQCHCLPNVVGQHCDRCAP
DTWNMASGRGCQTCDCDPKHSYGTSCNEISGQCSCHPGFGGRTCSECRELFWGDPEIKCH
ACDCDPHGISEQQCNKVSGHCVCVDGVSGPRCDVCARGFSGTFPDCHRCHQCFAEWDNII
GQLTNQTHRLVNKVNAIKASGVSGPYKKSIDSMEKSMADIRVLLNQNPASQPLTEIQHLL
QQASDLMRALSQMLNDTEQTLDRVEHLNSAAETKLDSVSSDAQKLERTVQELLDQVEFIK
NSDIRGATDSITKYFLQSQEAEARANASTTDAGSPVQTSGTLRQLTEDKLNRTREEFLRR
HMEHAQRLDDLAGELQTLDLSEISHKTCGSPLPGQDLCSSSSCGGLGCVDSQGRTRCGGE
GCDGVVTMANSLWRKAQDSEQEIISTMGEVEKLSKMVSEAKLKADEAKLSAQDVLMKTNR
TKQRVDQSNEELRSLIKQIRDFLTQDVADLESIELVANEVLAMQMPTTPAQLQNLTEEIR
QKVGELGHVETILQQSADDIQRAENLLDQARRASEEAADVKDSAEKVKRALEEAQRAQTA
ASSAIQQAAADIQNTNNLLSSVQSETADAESKLNNATQRLQRLEQEVTLLRDKALNVSLS
TEQTNQDAASIRKVAEEVQKDLDSDLKDKYATVGQLIDQKAGGVADAKKRAESLQQEAKE
LLLQASDKLQLLKDLEKSYKDNQQTLEVKAEQLVELEANVKELLQEISHKVTVYSTCLF
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgttggagcttcagctcgcggtgctgctcgctctacaggtgtgtacttgtgctcaggag
ggcggggcctcggtgggcggggacctggatgatgtcggcctcccggaactcagtgacgtc
tgcaccgagggcagctgttacccagcaacaggagaccttctgattggccgagctcaccag
ctgtcatccacctccacctgtggtctgaaccgaccagaaccgttctgcatcgtcagccac
ctgcaggaagagaagaagtgttttgtgtgcgactctgcggcagcctacgatgaactgacc
aatcacacgagcagccatcgtatcgagaacgttgtcacaacgtttgctccaaacagactg
aagacgtggtggcagtctgagaatggtctggagaatgtcaccatccagctgaacctggag
gcagagtttcacttcacacacctcatcatgactttcaagacatttcgtcctgctgccatg
gtgatcgagcggtcagcggactttgggaagacgtggcaggtttatcgttactttgcctac
gactgtgagacgtccttctcccatgtttcccagggtccaatgcagaaggtcgatgatgtc
atctgtgactcacgttactccgacattgaaccatccactgagggagaggtgattttcaga
gttttggacccagcgttcaggatcgacgacccctacagccccaggatccagaacatgttg
aagatcaccaacctgcgggtgaagttcaccaaactgcacacgctcggagacaatctgctg
gactctcgtatggagattaaagagaagtattactatgccatctacgacatggtggtcaga
ggaaactgcttctgctatggacacgcctctgagtgtgcccccatccagggggctggacag
accagggagggcatggttcatggtcactgcatgtgtaaccacaacactaaaggtctgaac
tgtgaacagtgtcaggatttctaccatgaccttccctggagaccagctgagggacgcaac
accaatgcctgcaagaagtgcaactgtaaccagcactcagactcctgtcacttcgacatg
gccgtgttcatggcttcaggaaatgtcagtggaggcgtttgtgacaactgtcaacacaac
acagccggacacaactgtgagcagtgtaaaccattttactaccaacatccagagagagat
gttagagaccccaacatctgccaggcctgtaactgtgaccccctgggctctctgaatgga
ggaacatgtgaccggatgacggatgttcgagccggtctgatcgctggtcagtgtcgctgt
aaagtcaatgtggagggagagcgctgcgagcgctgcaaacaggcgtattacgggctgagt
gacgatcctgaaggctgtaaagcctgcacctgcagccctgtaggaacagttcctggagga
aatccttgcgacagtgaaacaggaagttgtttctgtaaacgtttggtgaccggacaagac
tgtgaccaatgtgtgtctgaacactggggtctcagtaatgatatggacggctgcagacca
tgtgactgtgacctcggaggagccgtcaataatcagtgtgaccaggtgagtggtcagtgc
atctgcagagatcacatgttcggtcgtcgctgcgatcaggttgagtctggattctacttc
attgctctggaccattatacctacgaggcagaggatgccaaatttggacctggagtgaca
gtggtgccaaggccccacccacaggaccgcagtcccacctggacaggtattggcctggtc
aatgtcccagagggggccttcctggaattctctgtggacaacatccctcactccatggag
tacgacattatcatccgctatgaacctcagctgcctgaccaatgggaggaggtcctgatg
accgtgatgaggcctggaccagtcagagcagacagccgctgtattaacactgtacctgat
gacgacaaccaaatgatctctcttcaccctggctcacggtatgtggttcttcccagacca
gtttgttttgaatctggtctgaactacacagtccgcctcagtctaccgctgtactcagcc
ctcagcgatgtccagtctccgtacacgctcatcgactcgatcgtgttgatgccacattgt
aagaacctggatatcttcactgcttcagaaggaggagactccagcgggaacagcggttgg
gaaactttccagcgttatcgttgtttagagaacagccagagtgttgtcaagacaccgatg
acagacatctgcagaaacttcattttcagcatctctgccatgttgcaccagggagctaaa
gaatgccagtgtgaccctcagggctccctcagcaccgtgtgtgaccccagtgggggtcaa
tgtcagtgtcgctccaatgtggttggcaggaactgtgacagatgtgctccagccacattc
cagttcggacccaacggctgcagagcatgtgcatgtgaccctcagggttcacagagtcag
ttttgtgatcagctcactggtcagtgtgtttgcgttccgggagcatatggtcgacagtgt
gatcgctgtctgccgggtcattggggtttccccgcctgccgacactgctcctgcaatgga
cacgctgacagctgtgaccccaacactgggtactgcatcgactgcaaggaccacagcacc
ggacacagctgtgacaggtgtctggatggttactatggtgacccggtattggggtcaggt
gaccactgtcgtccctgcatgtgtcctgatggccccggcagccagcggcagtttgcagga
agttgttaccgcagcgacaactcccagcaggccatctgtgtctgcaacaccggatacaga
ggtgctcgctgtgatgagtgctcacctggttactatggaaaccctggtgaaccggggggt
caatgtcagccctgtcagtgcaacagcaacatcgacatgttggacccagagtcttgcgat
gctcaaactggcgagtgtctgcgctgcctataccacagcgagggcgtcgcctgccacagc
tgcaaactgggttactatggcaatgctctgctgcaggactgcaggaagtgtgtttgtaat
cagctgggcagcgatccctccagctgtccatcatctggcgactgtcactgtgaccgcagc
agcggtcagtgtcactgcctcccgaacgtggtcggtcaacactgtgaccgctgtgcgccc
gacacctggaacatggcaagtggccgtggctgtcagacctgcgactgtgaccccaaacac
tcgtatgggacatcctgcaatgagatcagtggtcagtgttcctgtcaccccggctttgga
ggaagaacatgcagcgagtgtagagagcttttctggggagacccagagatcaaatgtcac
gcgtgcgactgtgaccctcacggtatctccgagcagcagtgtaacaaagtcagcggtcac
tgtgtctgtgttgacggtgtgtccggacctcgctgtgatgtctgcgcccgtggattctct
ggaaccttccctgactgccaccgctgccaccagtgcttcgctgagtgggacaacattatt
ggtcagctgaccaatcagacgcaccgcctcgtcaacaaggtcaacgccattaaagctagc
ggagtcagtggaccatacaagaagtccattgacagcatggagaagagcatggccgacatc
cgggtcctcctgaaccagaacccggcttcgcaaccactgaccgagatccagcacctgctg
cagcaggccagtgatctgatgagggccctgagccagatgttaaatgacacagaacagact
ctggaccgggtggaacacctgaactcagctgcagaaactaaactggactctgtgtcatcg
gacgcacagaaactggagcgaacagttcaggagctgctggatcaggtcgagttcatcaaa
aactctgacatcagaggggcgacagacagcatcactaagtactttctgcagtctcaggaa
gctgaagctcgagccaacgcctccaccactgatgccggcagccctgtgcaaacctccggc
actcttcggcaactcacagaggacaaactgaaccgaaccagagaggagttcctgaggaga
cacatggagcatgctcagagattggatgacttggcaggagagctgcagactctggacctg
tcagagatcagtcataagacctgcggaagtccattaccgggtcaggatttgtgctcgtcc
tcttcctgtggaggtctgggctgtgttgactctcagggtcggaccaggtgtggaggtgaa
ggatgtgacggtgtggtgacaatggccaacagcctctggaggaaggctcaagattcagaa
caggaaatcatcagcaccatgggggaggtggaaaaactttccaagatggtgtcagaggcc
aagctaaaggcagatgaggcaaagcttagtgctcaggacgtcctgatgaagaccaacaga
accaaacaaagagtcgaccagagtaacgaggagctaagaagtctcatcaaacagatcaga
gactttctaacacaggatgttgcagacctagagagcattgagctggtggcgaatgaggtt
ctggccatgcagatgccaaccacgccagctcagctgcagaacctgactgaggagattcgg
cagaaggtgggagaactaggacacgtggagaccatcctgcagcagagtgctgatgacatc
cagagagccgagaacctgctggaccaggcccgtcgagccagtgaggaagcagctgatgtg
aaggactccgcagagaaggtgaagcgagctctggaggaagctcagagagctcagacagct
gccagcagcgcaatccagcaggctgccgctgatatccagaacaccaacaacctgctgtcc
tctgtgcagtcagagacggcagatgcagagtcaaaactcaataatgccacccagaggctg
cagaggctcgagcaggaagtaacgctgctgagagacaaagctctgaatgtctctcttagc
acagaacagaccaatcaagacgcagcgagtatcagaaaggtcgctgaggaggtccagaaa
gacctggactcagacctgaaggataagtacgccacagtggggcagctgatagatcagaag
gcagggggtgtcgctgatgccaagaagagggcggaatcgctgcagcaggaagccaaagag
ttgttgttgcaggcaagcgacaagctgcagctgctcaaagatctggagaagtcgtacaaa
gacaaccagcagactctggaggtgaaggcagagcaactggtagaactggaggccaatgtg
aaggagctgctgcaggagatcagccacaaggtcaccgtctacagcacctgtctgttctag
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