Lates calcarifer (barramundi perch): 108891802
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Entry
108891802 CDS
T04895
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03020
RNA polymerase
lcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108891802
09124 Replication and repair
03420 Nucleotide excision repair
108891802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108891802
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108891802
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108891802
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108891802
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108891802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
108891802
NCBI-ProteinID:
XP_018544641
UniProt:
A0A4W6BKH3
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataatcagtacgatgaagatgatgatgaaatcactccagat
ctgtggcaggaagcgtgctggatcgtcatcagctcttattttgacgagaagggtctggtg
cggcagcagctggattcgttcgatgagttcatccagatgtcagttcagaggattgtggag
gacgctccacccatcgacctacaggctgaagcccagcacacctcaggggaggtggaggag
ccgcctcgttacctgctgaagtttgagcagatttacctttcgaagcccacacactgggag
agagatggagctccttctcccatgatgcccaatgaagcccgactacgaaacctcacgtac
tcagcccccctgtatgttgacatcacaaagaccataataaaggagggtgaggaccagctg
cagacccagcatcagaagaccttcattgggaagattcccatcatgcttcgctccacctac
tgcctgctgagcggcctgacggatcgagacctgtgtgagctcaacgagtgtccactcgac
cccggaggttatttcatcatcaacggctcagagaaggtgctgatcgctcaggaaaagatg
gccaccaacactgtttacgtttttgccaagaaggactcaaagtatgcctacacagctgag
tgtcggtcctgtttggaaaactcgtcccgtcccaccagcaccatctgggtcagcatgatg
gccagaggaggacagggggtgaagaagagtgcgatcggtcagaggatcgtatccacgctg
ccgtacatcagacaggaagttcccatcatcatcgtgtttcgagcactgggcttcgtgtca
gacagagacatcttggaacacatcatctacgattttgacgacccggaaatgatggagatg
gtgaagccatctctggacgaagcgttcgtgatccaggagcagaacgtggcgttgaacttt
atcggatccagaggagcgaaacctggagtgacgaaagaacgaagaatcaaatacgcaaaa
gaagttctacagaaagaaatgcttccacatgttggagtcagcgacttctgtgagaccaaa
aaggcttacttcttagggtacatggtccacaggttgctgctcgcggctcttggtaggcgt
gagctggatgacagagatcactacggcaacaagaggctggacctcgccgggccgctgttg
gctttcctgtttagaggcatgtttaaaaacctgctgaaggaaatcaggatttacgctcag
aagttcatcgaccgaggaaaagactttaatctggagcttgccattaaaaccaggatcatc
tcagacggactcaaatactctctggccaccgggaactggggcgatgttaagaaggctcat
caggctcgagcaggagtgtcccaggtgttgaatcgtctgacctttgcgtccactctgtcc
cacctccgccgagtcaactctccgatcggcagagacggaaaattggcaaaaccccgacag
ctgcacaacacactgtggggaatggtctgtccggccgagacgcctgagggtcacgctgtg
ggtctggtgaaaaacctggccctcatggcctacatctctgtgggctctcagccatccccc
atcctggagtttctggaagagtggagtatggagaacctggaggagatctcacctgctgcc
atcgcagatgcaactaagatctttgtgaacggctgctgggtcggaatccacaaagatcct
gaacagctgatgaacacactgagaaaactgcgcagacagatggacatcatcgtgtctgag
gtgtcgatgatcagagacatcagagaacgtgagattagaatctacactgatgccggacga
atctgtcgaccgctgctgattgtcgagaaacaaaaactactgctgaagagacgacacatc
gaccagctgaaggagagagagtacaacaactacagctggcaggacctggtggcgagcggt
gtggtggagtacattgacactttggaggaggagacggtgatgcttgccatgacccctgat
gacctccaggagaaaggcgtggcctactgctccacctacacccactgtgagattcacccg
tccatgatccttggagtctgcgcctccatcatccctttccctgaccacaaccagtctccc
aggaacacgtaccagtctgctatgggtaaacaggccatgggcgtctacatcaccaacttc
catgttcgaatggacacgctggctcacgtgttgtattaccctcagaaaccacttgtcacc
acccgatccatggagtacctgcgcttcagagagctgcctgcaggcatcaactccatcgtg
gcgattgcctcgtacacgggatacaaccaggaggactctgtgatcatgaacaggtcggcc
gtggatcgaggcttcttcaggtctgttttctatcggtcctacaaagagcaggagtcaaag
aaaggttttgatcaggaggagatctttgagaagccgacacgtgaaacctgtcagggtatg
agacacgccatctacgacaagctggatgacgacggtctgattgctcctggagtccgtgtg
tccggcgaggacgtgatcattgggaagacggtgacgctgccggagaacgatgacgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctgaggaccagcgag
actggcatcgtggaccaggtgatggtgaccctgaaccaggagggctacaagttctgcaag
atcagggtccgttcagtccgaattcctcagatcggagacaagtttgccagtcgacacgga
cagaaaggaacctgtgggatccagtacagacaggaggacatgccgttcacctgtgaggga
atcacacctgacatcatcatcaaccctcacgccatcccgtccagaatgacggtcggtcat
ctgatcgagtgtctgcagggaaaggtgtctgcaaacaaaggtgagattggcgatgcgaca
ccgtttaatgacgccgttaacgtacagaaagtgtcgaacctgctgtctgagtatggatac
cacctgagaggaaatgaggttctgtataatggattcacggggaggaagctaacgtctcag
atcttcatcggtccgacgtattatcagcgtctgaagcacatggttgatgacaagatccac
tccagggcccgaggcccagtccagatcctgaacaggcagccaatggagggacggtcacgt
gatggcggtcttcggttcggggagatggagcgcgactgtcagattgctcacggagcggct
cagttcctcagagagcgtctgtttgaggcgtctgatccgtatcaggttcacgtctgtaac
ctctgtggcctcatggcgatcgccaacacgcggacgcacacgtatgagtgtcgaggctgc
cgcaacaagactcagatctcgctcgtccggatgccatacgcctgtaaacttcttttccag
gagttgatgtcgatgagcatcgcccctcgtatgatgacatcatag
DBGET
integrated database retrieval system
