Lates calcarifer (barramundi perch): 108891821
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Entry
108891821 CDS
T04895
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108891821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108891821
03036 Chromosome and associated proteins [BR:
lcf03036
]
108891821
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108891821
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108891821
PBAF complex
108891821
GBAF(ncBAF) complex
108891821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
108891821
NCBI-ProteinID:
XP_018544664
UniProt:
A0A4W6DZW3
LinkDB
All DBs
Position
LG23:9144736..9153707
Genome browser
AA seq
503 aa
AA seq
DB search
MASRGGFTGPPMNPNVNPMNVGHSAGMRMPGMPQPPAGYPRSMNSAPQYLQRPGMPPSRV
GGPMGSMGGQLPGPSYGGGSMPMRPGMGPPSMDTSRKRFLHQHQQQQQEALGGGLRRGAK
RRKMADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPIMQKRKLRI
YISNTYTPSKPEGEEAEKVSSWELRVEGKLLEEPGKQKRKFSSFFKSLVIELDKELYGPD
NHLVEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTR
ASIMQALWLYIKNNKLQDSHEKEYINCNRYFRQIFGCPRMRFSEIPMKLAGLLQHPDPII
INHIISVDPTDQKKTACYDIDVEVDDPLKGQMNSFLSSTTNQQEIAALEMKIHETIEYIN
QLKTERDFMLSFSNNPQDFIQDWLKSQSRDLKLMTDVTGNPEEERRTEFYQAPWVPEAVG
RYIYSKVQQRRQELEQVLGIRLT
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaagaggaggcttcacgggtcccccgatgaatccgaatgtgaatcccatgaat
gtagggcattcagcgggcatgaggatgccaggaatgccgcagcccccggcgggatacccc
cgaagcatgaacagcgctccccagtacctccagcgtccagggatgccacccagtagggtg
gggggccccatggggtcaatggggggtcagctgcctggcccctcttatggtggagggagc
atgcccatgcggccaggcatggggcccccaagcatggacacctcaaggaagcggttcctt
catcagcatcagcagcagcagcaagaggcgttgggaggaggcctcagacgaggggcaaaa
cgacgcaagatggcagacaaggttctcccacagaggatcagagacctggtcccagaatcc
caggcctacatggacctcttggcctttgagaggaaactggatcagaccatcgcccgaaag
cgtatggagattcaggaagccatcaagaagcccattatgcaaaaacgcaaactcaggatc
tacatttccaacacatacacgcccagcaagcctgagggtgaggaggcagagaaggtgtcg
tcctgggagctgagagtggaaggcaaacttctggaggaacccggcaagcaaaagaggaag
ttctcatctttcttcaagagcctggtgattgagctagataaggagctctatggacctgac
aaccacttagtagagtggcatagaatgcccaccacccaggagacagatggtttccaggtt
aaaagacctggcgatgtgaatgttaaatgcactctactgctcatgctcgaccaccagccc
cctcagtacaaactggacccacggctggctcgtctgctgggtgtgcacacacagaccagg
gccagcatcatgcaagctctctggctctatatcaagaacaacaagctgcaggatagtcat
gagaaggagtacatcaactgcaaccgctatttcagacaaatctttggctgtcctcgcatg
aggttctctgaaattcccatgaaactggcgggcctgctgcagcaccctgaccccatcatt
atcaatcacatcattagtgtggaccccacggatcagaagaagactgcttgttatgacatt
gatgtggaggttgatgatccactgaagggacagatgaacagttttttgtcctctacaact
aaccaacaggagattgctgctctggagatgaagatccatgagacgattgagtacattaac
cagctgaagactgagagagactttatgctgagcttcagcaataatccacaggatttcatc
caggactggctcaagtctcagagcagagatctgaagttgatgacagatgtgacaggaaac
ccagaggaggaaaggaggactgagttctaccaggcaccctgggtaccagaggcagtgggc
agatacatttactccaaagtgcaacagagaagacaagagttggagcaggtgttgggtatc
cgactcacctaa
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