Lates calcarifer (barramundi perch): 108891866
Help
Entry
108891866 CDS
T04895
Symbol
rp1l1a
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein rp1l1a
KO
K19538
retinitis pigmentosa 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108891866 (rp1l1a)
04812 Cytoskeleton proteins [BR:
lcf04812
]
108891866 (rp1l1a)
Cilium and associated proteins [BR:
lcf03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
108891866 (rp1l1a)
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
108891866 (rp1l1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
DUF7406
Motif
Other DBs
NCBI-GeneID:
108891866
NCBI-ProteinID:
XP_050921959
UniProt:
A0AAJ8DKB2
LinkDB
All DBs
Position
LG7_2:9875018..9891659
Genome browser
AA seq
2867 aa
AA seq
DB search
MHSVQAGMWDPSPPSKHTSPLPAPHPSNLRLAHVTTATPAKRITFYKSGDSQFGGVRMAI
HKRSFKCFDALLDDLSQKVPLPFGVRTVTTPRGTNTIKHLEQLQDGGCYLCSDRRQAKPI
NMELANKRPSIWHHHSRRPHRPETSPTTPPGHLPYRQRRILLVKNSEPGMRRSVVLSRRS
TRSMRVFLDEVSEVMQFHVRKLYTAEGRRIDNVQSLMTCPGVLVCVGREAFSPTLVNFIK
KSSEEKLPGLGNRSPGLGPRIPGNGARSPATQGARSSPHGAQSRASEYSEGHESKKNVNF
GLETKKSIIHPRSDSSNRSARFSLSSEKSYSNGISAYSQARPAIMNDDIEKRVLVNKDGS
LSVEMRVRFRLHNDETLQWSTQIKKSPSLTNDCCPLSQVQPHYLQQGQSESCSDPDSWVV
DPEGVDFSSQHLRRALEANRCPCCYQRQEQQYDLWENPAHSHKQPLAPPPHPHTSSHTHT
MMRHTHSSSSSSSCNSRRVVRCRAQLSSCGGGSGSEQSQLVQEEMSVTEQVESRVEVEHD
GDTHVEIHRVSRCCSRSEVVAIDSNLQPLSRKSVEDELMMEEDGERPLSAVSSSSHILQS
LKEDQDDEDDDLPPSASQCCHSNEPSPSPPSQTHLIDKPTSNISAGSEHKKHKDGEERGS
RAVSVASSCHCAAVTANSAAEAEERNQDVSRASSKSSKPKILNSEEERAADDEDKEIKRV
VSGLSGHSALSAGSQKSGASSVCPKCGGCKSGFKSDSSRTASQRSHHPPSPNPASPLCNQ
ENATNGINDDGSDDSAVSTQSNKTNLTNHGRSSAISNVIDSRASSAMSRTSNAEPAVKED
ERAPSATSGTSHRSSRSHKSGCNDATGATVDSEEKRGPSTMSAQSILSAKSRKSHKSNCS
GKAESPDMRRREEAEGENDAERAVSSLSAKSAVSAKTSASVKSHKFNCPLSKVASPTDNK
AVEDNDTNKRAPSSLSVKSNASAKSGKAERPDSAVSAKSTKSNVTAKSSTSHRSTYSHCA
KALSPGAKVADEPIQTTKQEEGTEEEERVATAMSAKSNLSVKSNKSHKSTKASETSLSPR
SEAEGDGEERAASQMSARSVKSNMSVKSSKSNCDGNETVAEEKESKIAEEETQQRPESAL
SAKSEKEERAASAGSSRSQKSNCNGNTGASSERQDNTGVSEKAKDRVASALSGKAASSAK
SDHTKTDMDGMVDRTPTAMSGKSHTSCKSSKSQKSEHTAASPNREEKQDESQERVASAMS
IKSKSSHKSDSGKNHKSASPSPNVVTINTPEGVDEEGNETTERAPSAASAKSEKSNVSSN
HNGTADITVIETADIDEKVLEDSAPKNKSPEHSLGQTLSPKRTRSPRAQSPKAPAASSSS
SQLLPAEKRGPSALSDHSTTSAKSSRSKCHCGAASALEKTKKEKEEEDKDEEKGEDNEEL
KTVGASERAASILSSASKRHRRESGGTEQPLSRQSSGSVSLGLPEDQETADSDSGKSSVS
FHINIESKGRVKTATPDVPKSPEESAMKEDVEETGSTVSQKSRSNENKSALSHSIPAVDI
PTIETPGGGEDEDQEDGGQKIQRATSAFSAKSSRSHKSSCNCQIKPGDMHVSKPKEQHAS
APGNDHETESVKSASTTKASNVDAPKSRTSPAMSSASDKVQNKSPTSASTKNADVEKTPV
GESANNDTENQNICRPASKVQGEEDIADDKAASVHSKSSRCLRPELAASSQSGSKTKGSK
QSKGEASVKSDYLNPVKGNKTKSNAGSNTGSVKISNSQKKETHITPSSPCPLHSSRPGSK
VETCSESILSHSLSAADLLKETMAARPQSQQSKASKTRSEKSARECQRIRNKKDQREELE
MTPACLPNASPIEVVSDWLRSIPANSSMLALGDELSEGEQEKEVKEKSEEVAKGEKSPND
ERVDKEEKSAAEEGVEKEGEAKCDAVEEEKSSDPAPGDAVGTSSDSNTQLLSGESLPRNW
HSSAAVMKVLLSSSLGRCRSMPEVSPVYGRRLSTSARGLLDCLAQLQLIEPAVKPGCDQK
DHNQQYENIMAILQSLWLTEPRDIDAKRVKDVGTEQVSPPRSSSGVDMRSGSGGSGKENG
NQGGDETPPKETESVHEDEGAKKIVEEDEERNAEDKDTEAEQEEASTEQATKDIAEEQMQ
SDEQSTVPPSLDSPKATENPSSSDKSSANDSSKSPTDNEQDTVEDSSSGTPPTVLRAPLS
KKLSQDPDPVWVLHLLKKLEKQFINHYINAMAEFKVRWDLDDSLILDTMIAELRDEVSRR
IQSSIEREMKKIQSRAGRGGRSPRPPQGGNLSRESTMTEKRRRMLKVMKNQSVKTADSLS
DGEMTGDFSDQRSDDEYCPCDACVRKKMAARPLKTNPMAAEAPVIMEFDLLKILQLKKSP
SPVIPQPTDMEDDRAMEDEEGRNLEVVREEEEEEETKEDIKAEVVLEETIPEEDEEIGEE
DGGEAGEEEEVGAEKEENSAGDEGQTGCEEAGEEEASVNGEEEGGEGEAECQCHCAGNEE
ESDNAEEEEEAEETSDNTGEDETADDEEREREQGGENIEGEEETGEDETGDNEGETGTGE
EESDKETVKEVTAGEGETAENGDGEEDEEAVERECEVSDFKPEEEETTGRESGDEEETGD
TDNDNAGKNTTNEESTLVEEFVEGNVSASAEAEDEDDGDEEESHEDGGGESGEPGGESSE
EERASPKVQGATPAVCVTEGEEADAEDSDTDNKHPSDTSADESGREGAGTTGDEEEKEGG
GDRDEEVVEDAVEEFKPEEEDKEEANRNKREDGALLHQFTRTSVESQPGSLEDIDTDSPL
NPVSSIEVPKMAASVSTGGGTSQKRSRSPARVKRRQPKESDSELDNS
NT seq
8604 nt
NT seq
+upstream
nt +downstream
nt
atgcattcggtccaggcagggatgtgggaccccagccccccatctaaacatacctcacct
ctcccagcaccacatccctccaacttacgcctcgcccatgtgaccacagccaccccagca
aagaggattaccttctacaaaagtggtgacagtcagtttgggggcgtcaggatggctatc
cacaagcgcagcttcaaatgctttgacgccctgctggatgacctttcccaaaaggtgcct
ctaccatttggcgtacgaactgtaaccaccccccgtggcaccaacaccatcaaacacctg
gagcagctccaggatggtggctgctacctgtgctctgaccgacgccaagctaagccaata
aacatggaattggctaacaaacgtccgagcatctggcaccatcacagccggaggcctcac
cggcctgaaacctcacccacaacaccaccgggccatttgccttacaggcagcgacggatc
ctgctggtgaagaacagtgaaccagggatgagaaggagcgtggtgctgagcaggaggtcg
accaggagcatgagggtctttctggatgaagtgtctgaggttatgcagtttcatgtccgc
aaactctacactgcagagggacgcaggattgacaacgtgcagagcctgatgacttgccct
ggtgtattggtttgtgtcggccgggaagcgttcagtccaacgctggtaaactttatcaaa
aagagctcagaggaaaaactacctggtctgggcaacaggtcccctggtcttggccccagg
attcctggaaatggtgcccgatctcctgctactcaaggagcaagatcctcacctcatgga
gctcagtccagagccagcgagtacagtgaaggacatgaaagcaaaaaaaatgttaacttt
ggtctggaaactaaaaagagcatcatccaccctcgttctgattcctcaaaccgctccgcc
cgtttctctttgtcttcagagaaatcatacagcaatggtatcagtgcctactcccaggcc
agaccggctattatgaatgatgacattgaaaagcgtgtgcttgtcaataaagatggcagc
ctctcagtagagatgagggtgcgttttcgcctccacaacgatgagaccctacaatggtcc
acacaaattaaaaaatccccatctctgaccaatgactgttgccccctgagccaggtccag
ccccattacctgcagcagggccaatcagaaagctgctctgatcctgattcctgggtcgtt
gacccagagggtgtggatttttccagccaacatctgcggcgtgcactggaagcaaaccgc
tgcccttgctgctaccagagacaggagcagcagtacgacttgtgggaaaatccagcacac
agccacaaacagccgcttgctccacccccgcatccacatacttctagccacacccacact
atgatgagacatacacactcctctagctcttcttcatcatgtaattccaggagagtggtg
cgctgccgtgcacagctctccagctgtggaggtggctcaggttcagaacagagccaactg
gtccaagaggagatgtctgtaacagagcaggttgagagcagagtagaggtggagcatgat
ggagacacccatgtagagatacacagggtgagccggtgctgcagccgcagcgaagtcgtc
gccatagatagcaacctacaaccactgagcagaaagtcagtcgaggatgagctaatgatg
gaggaagatggagagcgtccactgtctgcagtcagcagctcctcacatatactgcaatca
ctgaaagaggaccaggatgatgaggatgatgacctgccacccagcgcttcacagtgctgt
cacagcaatgaaccatcaccatccccaccctcccagactcaccttattgacaagccaaca
agcaacatctcggcaggctccgaacacaagaagcataaggatggggaagagagaggaagc
agggctgtatctgtagcttcctcctgtcactgtgcagcagttactgcaaactcagcagcc
gaagcagaggagaggaatcaggacgtgagcagagcctcatccaagtctagcaaacccaag
atcctaaactcagaagaagagagggcagcagatgatgaggataaagagataaagagagtt
gtcagtggcttgtctggtcactcagcactttcagcaggctcccagaagtcaggggcatct
agtgtgtgccctaaatgtgggggctgcaaaagtgggttcaagtctgattccagtagaaca
gcatcacagaggtcccatcatcccccctctccaaaccccgcctcacctctctgcaaccaa
gagaatgcaactaatggcattaatgatgatggctcagatgactcagctgtgtccacacaa
tccaacaagacaaatctcaccaaccatgggcgctcctctgcaatatcaaatgtcatagac
agtagagcatctagtgccatgtccagaacatccaatgctgagccagcagtaaaagaggat
gaacgggctcctagtgccacctcaggaacaagccacaggtccagtagatcacacaaatct
ggctgtaatgatgccactggtgcaacagttgacagtgaggagaagagaggccccagcacc
atgtcagctcagtccatcctgtctgccaagtccagaaagtctcacaagtccaactgcagt
ggcaaagctgaatcacctgacatgagaagaagagaggaagcagagggagagaatgatgca
gagagagcagtcagctccctgtcagccaaatctgctgtttcagcaaagaccagtgcttca
gtcaagtctcataagttcaactgccccttaagtaaggttgcttccccaactgacaataaa
gctgtggaagacaatgacacaaacaaaagagctccaagtagcctttctgttaagtctaat
gcttctgccaaatctggcaaggcagaaagacctgatagtgcagtatcagctaaatcaaca
aaatcaaatgttacagccaagtccagcacttctcataggtccacatacagtcactgtgca
aaagcattatctccaggtgctaaggtagctgatgaacccatccaaacaacaaaacaggaa
gaaggaacagaggaggaagagagagtagcaactgccatgtcagccaaatccaatctgtct
gtcaagtccaacaaatcccataagtccaccaaagcttcagagacgtcactttctcccagg
tcagaagcagaaggagatggagaagaaagggcagcaagtcaaatgtctgccagatcagtt
aaatctaacatgtctgttaagtcttcaaagtctaactgtgatggtaatgaaactgtggct
gaagaaaaagaaagcaagatagctgaagaggaaacacagcagaggccagaaagtgcattg
tctgctaaatcagaaaaagaagaaagagcagccagtgctgggtcttctaggtctcagaaa
tctaactgtaatggcaacacaggagcaagttctgaaagacaagacaatacaggagttagt
gaaaaagctaaggacagggttgccagtgctttatctggcaaagcagcttcctctgctaag
tctgaccatacaaagacagacatggatggtatggtggacagaacccccactgccatgtcg
gggaaatcacacacttcttgcaaatcctccaagtcccagaagtcagagcacactgcagca
tctccaaacagagaagagaagcaagatgaaagtcaggagcgggttgctagtgccatgtct
ataaagtcaaaatcttctcacaagtcagattctggcaagaatcataaatcagcgtcacca
agcccaaatgttgttactatcaacacaccagaaggagttgatgaagagggaaatgagaca
acagagagagcaccaagtgctgcatcagctaaatcagaaaagtctaatgtttcatccaat
cataatggaacagctgatattacagtcattgaaacagcagatatagatgaaaaggttttg
gaggacagtgcaccaaaaaataaatcccctgaacattctcttggccaaacgctctcaccc
aagaggacacgttccccaagggcccagtcacccaaagctccagctgcatcctccagtagt
tcacagttgttacctgcagagaaaagagggcctagtgccttgtcagatcattccacaacc
tctgctaaatctagcaggtccaaatgtcactgtggagcagcttcagcacttgaaaagaca
aagaaagaaaaggaggaggaggacaaggatgaggagaaaggggaagataatgaggaacta
aaaactgtgggggcttctgagcgggctgctagcatcttatcatccgcttccaaaagacac
aggagggaatcaggaggcactgaacaaccactgagtcgacaatcatcagggtcagtctct
cttgggttgccagaagaccaagaaacagctgactcagacagtggcaagtccagtgtttcg
tttcacataaacattgagagtaagggcagagtgaagacagcaactcctgatgtccccaaa
agcccagaggagtctgctatgaaggaagatgtggaggagacagggtccacggtgtctcaa
aagtccaggagtaatgaaaataaaagcgctttgtctcacagtattccagcggtcgacatc
cctactattgaaactccaggagggggtgaagatgaagatcaagaagatggagggcaaaaa
atacaaagagcaaccagtgcattttcagccaaaagcagcaggtctcacaagtcctcttgt
aactgtcaaatcaaaccaggtgatatgcatgtcagtaagcctaaagagcaacatgcaagt
gcaccaggaaatgaccatgaaacagaaagtgttaagtctgcttcaactacaaaagctagc
aatgtggatgcccccaagagcagaacctcacctgcaatgtcatcagcaagtgataaagtt
cagaacaaatcccctacaagtgccagcactaaaaatgctgatgtagaaaaaacacctgtt
ggagaatcagcaaataatgacactgaaaaccaaaacatctgtcgcccagcaagtaaggtc
caaggggaggaagatattgcagatgacaaggccgccagtgttcactccaagagttcacgt
tgcctcaggcctgagctagcagcttcatctcaatcagggtcaaaaacaaaaggctcaaag
caaagtaaaggagaggcttcagtcaagtcagactatttgaatccagtcaaaggtaacaag
accaaatccaatgcaggaagcaacactggcagtgtcaaaatatccaattcacaaaagaaa
gaaacacacataacaccctctagcccctgccccttacacagctccagaccaggcagcaaa
gtggagacatgtagtgaaagcattctgtctcactctttgtctgctgcagacctgctaaag
gaaaccatggctgcacgtccacaaagccaacagtcaaaagccagcaaaaccaggagtgag
aaaagtgccagagagtgtcagagaatcaggaacaagaaggatcagagggaggaactagaa
atgacgcctgcctgtctgcccaatgcttcccctattgaggttgttagcgattggctgcgg
agcattccagctaacagcagcatgctggcacttggtgacgagctgagtgagggtgagcag
gagaaggaggtaaaagagaaatctgaagaagtagcaaagggggaaaagagtcccaatgac
gagagagtggacaaggaggagaaatctgcggctgaagagggagtggagaaagagggagaa
gctaaatgtgatgcagtagaggaggaaaagagttctgatccagctccaggtgatgcagtg
gggacctcttctgactccaacactcagttgctaagtggcgagtctctgcccaggaactgg
cattcttctgcggctgtaatgaaagttcttctgagctcttcactgggtcgatgccggagc
atgccagaggtgtctccagtttatggtcgtagactgagcacatcagccagggggctcttg
gactgtttggcccagctccagcttattgagcctgcagtgaaacctggctgtgaccagaaa
gaccacaaccagcagtatgagaacatcatggccatccttcaatccctctggctcactgaa
cccagggacattgatgccaagagggtcaaagatgttggcacagagcaggtgtcgccacca
aggtcctcatccggggtggatatgaggagtggctctggtggatctgggaaggagaatgga
aatcaaggtggagatgaaacacctccaaaagagacagaatctgtacatgaggatgaggga
gcaaagaagattgtagaggaggatgaggaaagaaatgcagaagataaagacactgaggca
gaacaagaggaggcatccacagagcaagcaaccaaggatatagcagaggaacagatgcag
agtgatgagcaaagtacagtccctccaagtctggacagtccaaaagccaccgagaaccca
tcatcatcagacaagagctctgccaacgacagctctaaatcccccactgataatgagcaa
gacacagtggaggactccagctccggcacacccccgactgtcctgcgagcacccttgtcc
aaaaaactatcccaagaccctgatccagtttgggtcctgcaccttctgaagaagctggag
aaacagttcataaaccactacattaatgcaatggcagagtttaaggttcgctgggacctt
gacgacagcctcatcctggacacgatgatcgctgagctcagggacgaggtgagtcggcgc
atccagagcagcatcgaacgtgagatgaagaagattcagagtcgagctggcagagggggg
aggtcgccccggccaccgcaaggagggaacctctccagggagtccaccatgacagagaag
agacgtcgaatgttaaaggtcatgaagaaccaatcggtgaaaaccgctgactctctcagt
gatggagagatgacaggtgatttcagcgaccaacgaagtgatgatgagtactgcccctgt
gatgcttgtgtccgcaagaaaatggctgcccggcctctcaaaaccaacccaatggcagct
gaagcaccagtaatcatggagtttgacctccttaagatacttcagctaaagaaaagccct
tcaccagtcattccccaacctacagacatggaagatgatagagccatggaagacgaggag
ggaagaaatttagaggtagtacgggaggaggaggaggaggaggaaaccaaagaggatatt
aaagctgaggttgttttagaggagacgatcccagaggaggatgaagagataggagaagaa
gatgggggtgaggcaggagaagaggaggaggtaggagctgaaaaggaagaaaatagtgca
ggtgatgagggacagacaggttgtgaggaagctggagaagaggaggcatcagtaaatggg
gaagaggaggggggagagggggaggcagaatgccaatgccactgtgccggaaatgaagag
gagagtgacaatgcagaggaggaagaggaggctgaggaaactagcgacaacacaggtgag
gatgagacagcagatgatgaagagagagaaagggagcaagggggggagaacatagaaggt
gaagaagagacaggagaggatgagacaggggacaatgaaggcgagacaggaactggggaa
gaggagagtgacaaagagacagttaaagaggtaacagcaggtgagggagagaccgctgaa
aatggtgacggtgaggaagatgaggaagcagtggagagagagtgtgaagtgtctgatttt
aagcctgaggaagaggaaacaacaggcagggaaagtggagatgaggaggagacgggggat
acagacaatgacaatgctggaaaaaatacaacaaatgaagaatcaacactggtagaggag
tttgtggagggaaatgtcagcgcatcagcagaagcagaggatgaagatgatggtgatgag
gaggagtcacatgaagatggaggaggagaaagtggagagccgggaggggagtcatctgag
gaggaaagagcctcaccaaaggtccagggggcgactccagctgtatgtgtgaccgaggga
gaggaggcagatgcagaagactccgacaccgacaacaaacacccaagtgacaccagtgca
gacgaatcaggacgtgagggtgctggaacaactggagatgaggaagaaaaagagggagga
ggagatagagatgaggaggttgtggaagatgctgtggaagagttcaagccagaggaagag
gacaaggaggaggcaaaccgcaacaaaagagaagatggtgctctactacatcagttcact
aggacctctgtggagtcccagcctggctccttggaagacattgacacagattcacccttg
aaccctgtaagctccatagaagtgcccaaaatggctgccagtgtatccactggtggtggc
accagccagaaaaggagtcggtcaccagccagggtcaaacggcgccagcccaaagagagt
gacagcgaactggataactcttaa
DBGET
integrated database retrieval system
