Lates calcarifer (barramundi perch): 108892258
Help
Entry
108892258 CDS
T04895
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf02010
ABC transporters
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108892258
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108892258
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108892258
Transporters [BR:
lcf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108892258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
Motif
Other DBs
NCBI-GeneID:
108892258
NCBI-ProteinID:
XP_018545227
UniProt:
A0A4W6DZ86
LinkDB
All DBs
Position
LG15:20940458..21078499
Genome browser
AA seq
2247 aa
AA seq
DB search
MGLLTQFTLLLWKNFTLRKRQKVRLIIEVIWPLFLFFILVWVRSTNKPIYKGQCHYPNKA
MPSAGVLPWLQGMICNINNPCLNYPTPGETPGQVNNFNNSIIAGVLIELQTLLVNRSILS
KAKLLADDINQWASVLPQSTPGNAQPMILRSILREDETFSTHLRDNLSVPPTVAESLMNA
KIYVNPMMGIPRPDSLRRILCEGTDLDEYVQFSSQGEKEAFQNVSCSLTPQQLINTQQVL
LQNLDARKVLSELPSPVDMNGADTVTLMGSTAQNALPVIEEVTRLQNSMIFKAASSLNFQ
EDMIGSVNMLLCGKQPDFNSTNMTLSLRSPRQTANDESISITGNSSDAFCQTLVDTLEGT
PGLRNIWSTFKPLLLGKVLYTPDTPAARLMVKEANSTFHALAMLKELVDMWDELGPRVWN
FLQNSPQVNAIRALLGNPVFAALLNQRLSGTGLTAELLANFLYNGPPEDRPPGMPPNDWR
DAYNATSQILNLLSNALGCLDLNKFEAVPTEGHLVSKALELLKNDTYWASIVFENLQPDS
RHPPPYVKYKIRMDVDEVERTNKVKERLWSPGARDNSFNDLRYIWGGFAYLQDMMDHGII
RAQTSKTQPLGVFAQQMPYPCFVDDVFIQSIGGILPMFLVLAFMYTVCMTIKGLVLEKEL
WLKEVLRAVGIQNGALWSSRFTENIVLLTVPCLLISVMVKYGKVLQYSDPSVIFVFLLVF
CVATITQCFFISVFFSKANLAAACGGLIYFVLYLPHILCYAWRDVMGFGAKVAVSLLSCV
AFGYGCENFSKYEEQGIGIQWYNIGKSPEEGGRYTFIVSIIMMLLDAALYWMLTWYIENV
FPGQYGIPKPWYFPFTASYWCGRASVTDADPGLLKDSSAHNEYMEKPPPNMKAGVSVRNL
VKIYKNGKKLAVDGLSVDFYENQITSFLGHNGAGKTTTMSILTGLFPPTSGTALINGYDI
HTDMDSIRKYLGMCPQHNVLFNELTVEEHIYFYARLKGHSRDEVKIEMDQMIKDVGLPHK
RKDLAKNLSGGMQRKLSVAIAFVGGSKIVILDEPTAGVDPYARRGIWELLLKYKQGRTII
LSTHHMDEADILGDRIAIISHGKMRCCGSSLFLKKCFGSGYYLTLVRDGAEKMTAQRNGI
IHSKPIEEKDCPSRSSPDDGIGSQSWSSSDPSDLTAVGQLVRRHVPEAVFLESIGQEITY
ILPYGGARDGTFALLFQELDLAMADLGLTSYGISDTTLEEIFLKVAEDTGVDAEIQTTKE
LLVRDCKRSSRESKRNSIASVHTTPHQVSGLSELKEKFTSKVEDLKKNASVNGKGSTVIT
GWELIRRQFLALFIKRFHHARRSRKGLIAQVVLPAVFVCLSLIFSLIVPPFAEYPSLELQ
PWMYGLPQTTFYSNDGPDNVEVSQVVETLVNNPGFGTRCMNGNPIPKLPCSPSGSDWFAP
SVDQSITDIFLNGNWSMSNPSPSCQCSTPKRTIMLPDCLPGAGGLPPQQRIQNTTDTLLN
LTGRNMTDFLVKTFAHSGKTRYGGISVGAVNSQVRMTEGEIEAAFRNLKDLLSSFQDNVT
DQILQTSETLLKKLGTRDNVKVWFYNQAWHGMVSFLSVANNAILRGNLPAGQNPRQYGIS
VSNHPLNLTKEQLSFVAMATTSTDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHLQFV
SGVNPAVYWLANFAWDMCNYIIPCLIVIVIFLCFQQKAYVSPPNLPALILLLVLYGWSIT
PMMYPASFIFSVPSTAYVVLTCINLFIGINGSVATFVMELFDDDKVSRINDIVKQVLLIF
PHFCLGRGLIDMAKNQAMAILFSSFGEDRFKDPLSWEMVGKNLCAMSIQGVVMFVITILI
QYKFFCKPRLISGKSLSAEEEDIDVARERVRVYEGKAQNDLLRIYDLTKVYPRKSTPAVD
KLCVGVPAAECFGLLGINGAGKTTTFKMLTGDIPVSSGEAFLNGYSIRTEMRDVHQNLGY
CPQFDAIDELLTGREHLEFYARLRGVPENEVTMVAEWGIQKLGLVKYFNKSAGTYSGGNK
RKLSTAIALIGCPPVIFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEAL
CTRMAIMVNGRFKCLGSIQHLKSRFGDGYTVIVRVGGSPPALKPVEDFVQQTFPGSVLKE
KHHNTLQYQLVCTQGALATIFSQFTSHQHRLGVEDYSVSQTTLDQVFVNFAKHQHGEEES
QAYDNAVDTSDELPLQSVKTSQEAEKV
NT seq
6744 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacgcaattcactctgctcctgtggaagaacttcactctccggaagaga
caaaaggtgcgactgatcattgaagtgatatggcctctgtttctcttcttcatactggta
tgggtgcggtccaccaataagccaatttacaaaggccagtgtcactacccaaataaagcc
atgccatcagctggtgtgctgccctggcttcaaggtatgatctgtaacatcaacaatccc
tgtctgaactacccaacaccaggggagacaccaggccaagtcaacaacttcaacaattcc
ataatcgccggagtgttgatagagctgcaaacccttctggtgaacagatctatcctcagc
aaggcgaagttgctggcagatgacatcaatcagtgggcatcagtcctgccacagtctacc
cctggtaatgctcaaccaatgatcctgaggagtattctaagagaagatgaaactttctcc
acacatctgagagataatttgtcggtgccgccaacagtcgcagaaagcctcatgaatgct
aaaatttacgtcaatccaatgatgggtattccaaggccagacagcctgaggaggatcctg
tgtgaggggacagatctggatgagtacgtccaatttagcagccaaggcgaaaaggaggct
tttcaaaatgtcagctgctccctcactccgcagcagctgattaacacccagcaagtactc
ctgcaaaacctggatgcgaggaaagtgctttctgagctaccttcacctgtggatatgaat
ggagcagacactgtgacactgatggggagcactgctcaaaatgcattaccagtgattgag
gaggtgaccaggttgcagaactccatgatctttaaggctgctagttcactgaatttccaa
gaggacatgattggcagtgtcaatatgcttctgtgtggaaagcagcctgacttcaattcc
accaatatgaccctcagtttacgctcacctagacagacggctaacgacgagtctatctcc
attactgggaacagttctgatgctttttgtcagactcttgtcgacaccctggagggcaca
cctggtctgcgtaacatttggagcaccttcaagccgttattgctaggcaaagtcctctac
acacctgatacacctgctgctcgcctcatggtgaaagaagcaaacagcacattccatgcc
ttggctatgttaaaagagcttgttgatatgtgggatgaacttgggccacgtgtttggaat
ttccttcaaaatagccctcaagtaaatgcaatacgggctttgctggggaacccagtgttt
gctgctctcctcaaccagcgtctcagtggcacaggcttgacggccgagctgctggccaac
ttcttgtacaatgggcctcccgaggatcgtccacccggcatgccgcccaatgactggcgg
gatgcttacaacgccacttcccaaatcctgaaccttctctccaatgcccttggctgttta
gacctgaataagtttgaggcagtccccactgaaggccatctggtgagcaaagcactggag
cttcttaagaatgatacgtactgggccagcattgtctttgaaaacctccagccagactcc
aggcacccccctccttatgtcaagtacaaaatccggatggacgtcgatgaagtagagcgc
accaacaaagtgaaagaaaggttatggtctcccggggcccgagacaactcctttaacgac
ctgcgctatatatggggaggcttcgcttacctgcaggatatgatggaccatggcattata
cgagcgcagacgtcaaagacccaacccctcggtgtttttgcccagcaaatgccataccct
tgttttgtggatgacgtcttcatccagagtattggaggcatcctcccaatgttccttgtg
ctggccttcatgtacactgtgtgcatgaccatcaaaggtctggtgctagagaaggaactg
tggctcaaggaagtgttgcgtgctgttggcattcagaacggcgccctttggtcttcaagg
ttcaccgagaacattgttctgctcacagttccctgcttgctcataagtgtcatggttaag
tatggtaaagtgctgcagtacagcgacccctcagtaatctttgtcttcctgctggtgttc
tgcgtggccaccatcacacagtgcttcttcattagcgtcttcttctctaaggccaactta
gcagcggcatgcggtggcctcatctactttgtcctctatctgccgcacatcctctgctac
gcctggagggacgtcatgggtttcggggccaaggttgctgtgagtttattatcctgtgtg
gcctttggctatggctgtgagaacttttccaagtatgaggagcaaggcatcggtatccag
tggtacaacattggcaagagtccagaagaggggggacgctatacgttcattgtgtccatc
attatgatgctccttgatgctgctttatactggatgctcacctggtacattgagaatgtc
tttccaggccaatatggaatccctaagccatggtacttccctttcactgcatcttattgg
tgtgggagagcctcagtgactgatgctgaccccggtttgctgaaagactcaagtgcacat
aacgaatacatggagaaaccaccacccaatatgaaagcaggggtctcagtccgcaatctt
gtcaaaatctacaagaatggaaagaagcttgccgtggacggactgagtgtggacttttac
gagaatcagatcacatcttttcttggccacaatggagctggaaaaacaaccacaatgtca
attctgacaggactgttcccgcctacgtcaggcacggccctcatcaatggatatgacatc
cacaccgacatggacagcatccggaagtatttgggaatgtgcccacagcacaatgtctta
ttcaatgagctgacagtggaggagcacatctacttctacgctcggctgaaaggacacagc
cgtgatgaggtgaaaattgagatggaccagatgattaaggatgttggtttaccacataaa
cggaaggatcttgctaagaacctgtcaggtggcatgcagaggaagctgtctgtggctata
gcatttgtcggcggctcgaaaatcgtcatcttagatgaacctacagcaggagtggacccc
tatgcccgcaggggtatctgggaactgctgttaaagtacaaacaaggtcgcaccatcatt
ttgtctacacaccacatggatgaggcagacatcttaggtgatcgcattgccattatctcc
cacggcaaaatgcgttgctgtggctcctcactcttcctgaagaaatgttttggcagcggc
tactacctcactctggtccgagatggggctgaaaagatgacagctcagcgtaatggtatt
attcacagtaaacccattgaggagaaagactgtccttcgaggagcagtccagacgatggc
atcggcagccaaagctggagcagctctgatccctcagatttgacagccgtgggtcagctt
gtgcggcgtcatgtccccgaggcggtcttcttggagagcatcggtcaagagatcacctac
atactgccctatggtggggccagagatgggacctttgctctgctcttccaagagctcgac
ctggccatggctgacctcggtctgaccagctacggcatctctgacaccacactggaggag
atatttcttaaagtggccgaagatactggagtggatgcagaaatacaaacaacaaaggag
ctgttggtgagagactgcaaaaggagctcccgcgaatccaagcggaacagcatcgccagc
gtccacaccacaccacaccaagtctctggactgagtgaattaaaggaaaaattcacaagt
aaagttgaagacttaaagaagaacgccagtgtgaatgggaagggatccacggtcatcact
gggtgggagctgatcaggaggcagttcctggcgctctttatcaagcgcttccaccacgcc
cggaggagccgcaagggactcattgcccaggtggtcttgcctgctgtttttgtgtgcctg
tctctgatcttctcgctcatcgtcccgcctttcgctgaatatcccagtctggagctgcag
ccctggatgtatggtctgcctcagaccacattttatagcaacgatgggccggataatgtg
gaggtgtctcaagtggtggaaaccttggtaaacaaccctggatttggaacccgctgcatg
aatggaaaccccataccgaaattaccatgttcccctagtggatctgattggttcgctccg
tccgtagatcagtcaatcaccgacatctttctcaacgggaactggagcatgtctaacccc
tccccatcctgtcagtgcagcacgccaaaacggacgatcatgttacctgactgtctacct
ggtgccgggggcctccctccacagcagaggatccagaacacaacagacacattgctgaat
ttaactggacggaacatgacagacttcttggtcaaaacttttgcgcactcgggtaaaaca
aggtacggagggatctctgtcggagcggtcaactcccaagtccgcatgactgagggagaa
atcgaagctgcattcaggaatctaaaagacctactcagttcatttcaggataatgtgact
gatcagatcttacagacgtctgagacgctgctgaagaagctgggaaccagggacaacgta
aaggtgtggttctataaccaggcatggcacggcatggtgtctttcctcagtgtggccaac
aacgccatcctgaggggaaatctgccagcgggacagaatccccgccagtacggcatctct
gtgtccaatcaccccctcaacctcaccaaagagcagctctcctttgtggccatggccaca
acctccactgacgtggtggtgtccatctgcgttatctttgccatgtccttcatccctgcc
agctttgtcctcttcctcatccaagagcgggtgagcaaagccaagcatctgcaatttgtc
agcggagtgaacccagctgtatactggttggccaattttgcctgggacatgtgtaactac
atcatcccatgcttgattgtgattgtgatcttcctctgcttccaacaaaaagcctatgtt
tcccctcctaacctgcctgctctgattctgctgcttgttttgtatgggtggtccatcacc
cccatgatgtaccctgcctctttcatcttcagcgtgcccagcacagcctacgtggtgctg
acctgcatcaacctcttcattggtattaacggcagcgtggccacctttgttatggagctc
tttgatgatgataaagtctcccgcatcaacgacatagtgaagcaggtgctgctgatattc
ccacatttctgtctgggcagagggctaattgacatggccaagaaccaggcaatggccatc
ctcttcagcagttttggggaagatcgtttcaaagatccactgagctgggaaatggtggga
aagaacctttgcgccatgtccatccagggagttgtcatgtttgtcatcacaatcctcatc
cagtataagttcttctgcaaaccgaggcttatttcagggaagtcattatctgcagaggaa
gaagatatcgatgttgctcgagaacgtgtccgagtgtatgagggcaaggcccagaatgac
cttctgaggatctatgacctcactaaggtataccctcggaagagcacccctgctgtggac
aagctatgtgtgggcgtacctgccgcagagtgtttcggcttgctgggaatcaatggggct
gggaaaaccaccacattcaagatgctgacaggagacatcccagtctccagtggagaggcc
ttcctaaatggatacagcatacgaacagaaatgagggatgtgcaccagaacttgggttat
tgtccccaatttgatgctattgatgagctgcttactggacgagaacatctggagttttac
gccaggttacgaggggtaccagaaaacgaggtcaccatggttgcagagtgggggatccag
aagttggggctggtcaaatatttcaacaagtcagcaggaacttacagcggtggaaacaaa
cgcaaactctctacagctatagccctgatcggttgtcctccagtgatctttctggatgag
ccaaccactgggatggaccccaaggcccggcgcttcttgtgggactgcatcctaagtgtc
atcaaagaaggacgctcagtcattctcacttcacacagtatggaggagtgtgaagcattg
tgcacacgcatggccatcatggtaaacggtcgcttcaagtgtctcgggagcatccagcat
ctaaagagcaggtttggtgatggctacacagtgattgtgagggttggtggctctcctcct
gccttgaagccagtcgaggacttcgtccagcagaccttcccaggcagtgtcctgaaggag
aagcatcacaacactctacagtatcagctggtgtgcacacagggagctttggccaccatc
ttcagccagttcaccagccatcaacacagactgggtgtggaggactactcggtttcgcag
accactctggatcaggtctttgtgaattttgcaaagcaccaacatggagaagaggagtct
caggcctacgacaacgcagtggacacttctgatgagctgccactgcagtctgtgaagacc
tcccaagaagcagagaaggtgtaa
DBGET
integrated database retrieval system
