Lates calcarifer (barramundi perch): 108892366
Help
Entry
108892366 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Topors-like
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108892366
03036 Chromosome and associated proteins [BR:
lcf03036
]
108892366
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108892366
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108892366
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108892366
UBL E3 ligases
108892366
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
108892366
Cilium and associated proteins [BR:
lcf03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
108892366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-RING_5
zf-C3HC4_4
zf-rbx1
RING_XB3-XBAT31
zf-ANAPC11
Baculo_IE-1
PWI
Motif
Other DBs
NCBI-GeneID:
108892366
NCBI-ProteinID:
XP_018545378
UniProt:
A0AAJ7Q301
LinkDB
All DBs
Position
LG9:21047925..21051353
Genome browser
AA seq
621 aa
AA seq
DB search
MPLTLRNSAGRRRKNPDEKLPERPGESTSAQVMAPTRMKLRVRRRDGAAAGGGSQPVEEE
ERGRESGGRSGRRKNTSNTSTTVAASSSSSPPTSSASASARAVMAAEEASPDSKCPICLD
RFNNLAYLDRCLHRFCFPCIQEWSHNKAECPLCKQPFASILHSVRAEDDFKEYTLRPAPA
NSSCRSHCGDGGSDGIGGEERPPDEVDVKEAXGADGGEMTTTTRRRRRERGGRGGGSRRT
GERTGVWEWYLDSPPLSLPPLPQHSAVSPVVAEDSEEGEDLEQQRVRGGADLAERGVIFE
GLTGLGGAVAPVAPNDRASRRLMTRLAARQRLQREGGTVRRLRERETVAFRRALYRCGIR
VRGVAGVNSNQGQQQRDITAESFRHNPAHLNRLRPWLRRELTVLYGAHGTLVDIVQRIIM
ARLARHGLEDTPTIEEELRPFLLARTDHFLHELVSFARSPLSLESYDLQAVYEPLAAALD
LDGTSSLSDSSSVIAISEGEEEETQAGGRSEERLQGRVGGANDDVIQTGSCLSLSAWDDE
TPGPSYSTVEPSCSLASLSFSPAPQEAANEEGGEKREEEGEEECLIVGYKKPIAERTPEL
VQLSSDTRGGGGQGERGEEND
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcacgctgcggaattctgccgggaggaggagaaaaaacccggatgaaaagctc
ccggagcgacccggggaatctacttctgctcaggtgatggcgcccacgcggatgaaactg
cgtgtgcgtcgccgtgatggtgcagcagcaggcggcggcagtcagccagtggaggaagag
gagcggggtcgagagagtggcggtcgcagcggcaggcggaaaaacaccagcaacacttcg
accacagtggccgcctcctcttcctcctctcctcccacctcctctgcctcagcgtcggca
agggcggtgatggcggcggaggaggcgtcacccgactccaagtgccccatctgtctggac
cgcttcaacaacctggcgtacctggaccgttgcctgcaccgcttctgcttcccctgcatc
caggagtggtcgcacaataaggcagagtgtccactctgcaagcagccgttcgcctccatc
ctgcactcggtccgcgccgaagacgactttaaggagtacacgctgcggccggcgcctgcc
aacagcagctgtcgcagccactgtggcgatggtggcagcgatggcatcggcggcgaggag
cgaccaccagatgaggttgatgttaaggaggcgtagggcgccgatggcggagagatgacg
acgacgacaaggaggcggaggagggagaggggaggaagaggaggggggagtaggaggaca
ggggagaggacgggggtgtgggagtggtatcttgactctcctcctctctctcttcctccc
cttcctcagcactctgccgtgtctccggtggtggcggaggacagcgaggagggagaagac
ctcgaacagcagagggtgaggggaggggcagatctggcggagcgtggggtgatatttgag
ggactgacgggcctcgggggggcagtagcacctgtggcccccaacgaccgggcgtcacga
cgtctgatgacacgtctggcggcaaggcagcggctgcagcgagagggcgggactgtacgg
cggctgagggagagagaaacggtggccttccgccgcgccctctaccgctgcgggataagg
gttcgcggtgttgccggggtcaacagtaatcaggggcagcagcagcgtgacatcacagca
gagagcttccgtcataaccccgcccacttgaacagactccgcccctggctgcggcgggag
ctcacagtgctgtacggcgcacacggcacactggtcgacatcgtccagcgcatcatcatg
gcgcggcttgcccgtcatggccttgaggacacgcctaccatagaagaagagctgcgacca
ttcctgttggctcgcaccgaccacttcctgcacgagctggtcagttttgcccgctcaccg
ctcagtctggagagctacgacctgcaggcagtgtacgagccactggccgcagccctggac
ctggacgggacaagcagcctctccgacagcagctccgtcattgccatatcagagggggag
gaagaggagactcaggcaggaggaaggtcagaggagaggcttcaggggagggtgggaggc
gctaacgacgatgtcatccaaacaggaagttgtctcagcttgtcagcctgggatgacgaa
acacccggcccctcctactccactgtcgaaccgtcgtgttcgctcgcctcgctgtcgttc
agcccagccccgcaggaggcagccaatgaggaggggggagagaagagggaggaggagggg
gaggaggagtgtctaattgtcggatacaagaagccaattgcggagcggactcctgagctg
gtgcagctctcctctgacaccagaggaggaggaggacaaggagaaagaggagaagaaaat
gactga
DBGET
integrated database retrieval system
