Lates calcarifer (barramundi perch): 108892381
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Entry
108892381 CDS
T04895
Name
(RefSeq) receptor-type tyrosine-protein phosphatase delta isoform X1
KO
K06777
receptor-type tyrosine-protein phosphatase delta [EC:
3.1.3.48
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108892381
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108892381
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108892381
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
108892381
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
108892381
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
Type II RPTP family
108892381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
ig
Interfer-bind
PTP-SAK
V-set
Tc-R-P
DSPc
Y_phosphatase3
PTPlike_phytase
Ig_C17orf99
PTP-NADK
Glyco_hydro_46
DUF5849
Motif
Other DBs
NCBI-GeneID:
108892381
NCBI-ProteinID:
XP_050932250
UniProt:
A0AAJ8BG42
LinkDB
All DBs
Position
LG15:complement(20190145..20534463)
Genome browser
AA seq
1937 aa
AA seq
DB search
MLVPSCPTMHRARPTLLLPLLLVLGLLLHLADAQTPPKFLRTPNDQTGVQGGVASFICQA
TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNSVGET
SATTRLTVLREDQLPPGFPTIDMGPQLKVVERTRTATMLCAASGNPDPDISWFKDFLPVN
TTNNNGRIKQLRSGGTPIRGALQIEQSEESDQGKYECVATNNDGTRYSAPANLYVRVRRV
PPRFSIPPTDNEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTPEDDMPIGRNVLELTDV
RQSANYTCVAMSTLGVIEAVAQITVKALPKAPGIPVVTERTATSITLTWDSGNPEPVSYY
IIQHKSKYSDDSYKEIDGVATTRYSVGGLSPYSDYEFRVVAVNNIGRGPHSESIEAKTAE
QAPSTAPRQVRGHMLSTTTAVIHWDEPEEANGQIMGYRVYYTMDSTQYVNLWEKQIVRGS
NFVTIQGLIPNKTYYIKVLAYTSVGDGPLSPDLQIIAKTGVPSQPTDFKGEAKSETSILL
SWIAPAQTGQENQITGYELMYRKRDDKEEKRISFEPTTTYLLKDLKPFTTYTFRLAARSK
HGVGAYTNEISAETPQTQPSGPPQEVKCHSPSSTSILVSWRPPPVELQNGIITQYTIQYA
ATEGEDTTTHQISSIPPESSQYLLENLEKWTEYRVTVIAHTDVGAGPESLPQLIRTEEDV
PSGPPRKVEVEAVNSSSIKVIWRSPMPTKQHGQIRGYQVHYVRMVNGEPTGQPVIKDILI
DDAQWEYDDSTEHEMVITELQAETTYSVTVAAYTTKGDGARSKPKLITTTGAVPDKPRLM
VSTTNMGTALLQWHPPVLTHGPLQGYRLRFGRKDVDPLTVIEFPERENHYTTKEIHKGAS
YTFRLSARNKVGFGEETVKEVTTNEDVPSGYPQSITAEGATTSTIQVSWQPVLLAERNGQ
IVKYALQYKDINSPRSPSELFITAPESTVILDGLKADTTYDIKMCAFTSKGSGPYSPSVQ
FRTQPLDQAVFAKNFHVKAAMKTSVLLTWEIPDTYNPAQPFTILYDNGQSVEVDGKLTQK
LITGLQPETQYSFLLTNRGNSAGGLQHRVSTMTAPDILRTKPYLIGKTNSDGMVTVELPS
VQTSERVRGYYIVVVPLKKQRTGKFFKPWDNPDEMNLEELLKEINRTSRGLRLRRQAEPK
AYIAAYFKDLPKEFTLGDGKIYGDFENKQLQSGQEYIFFVLAVLEMSENIMYATSPYSDP
VVSADIDPQPIIDEEEGLIWVVGPVLAVVFIICIVIAILLYKRKRAESEARKGSLPNSKE
MPLHHPTDPVELRRLNFQTPGSGAPSHPSNLHLSSMASHPPIPIMDLADHLERLKANDNL
KFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAIDGIPGSDYINANY
IDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSAIIVMMTKLEERSRVKCDQYWPTRGTE
TYGLIQVTLLDTVELATYCVRTFALFKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFL
RRVKACNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYM
VQTEDQYVFIHDALQEAVNCGTTEVPARNLYAYIQKLTQIEGGENVTGMELEFKRLANTK
AHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYI
ATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMA
EYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFG
QDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQF
CYRAGLEYLGSFDHYAT
NT seq
5814 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgccaagctgtcccaccatgcacagagccagacccacgctgctgctgccgctg
ctgcttgtcctgggtctgctcctccacctcgccgacgctcaaacaccaccaaagttttta
agaacccccaatgaccaaacaggcgtgcaaggaggtgtggcatccttcatctgccaagct
acaggagatccacggccgaagattgtgtggaacaagaaggggaagaaagtcagcaaccag
agatttgaggtgattgagttcgatgacggctctggttcagtgctaagaattcagccattg
cgcacgcctcgagatgaagccatatatgaatgcgtcgcctccaacagtgttggagagacg
agcgctaccaccagactcactgttttacgtgaggaccagctgccccctggtttccccacc
atagacatgggcccacagttgaaagtggtggagcgaacacgcactgccaccatgctctgt
gccgccagtggcaacccagacccagacatctcctggttcaaagacttcctccctgtcaac
accaccaacaacaatggacgcattaaacagctcagatcaggtggtacaccaataagagga
gccctccagatagagcagagcgaagagtctgaccagggcaagtatgaatgtgtggcgacc
aacaacgatggaacccgctactctgcccctgcaaatctatatgtcagagtgcgtcgggtg
ccaccacgattctccattccacctacagacaatgagatcatgccaggcggcagtgttaat
atcacatgtgtggcagtgggctcgcccatgccatatgtcaagtggatgctgggtgctgaa
gacctcacaccagaggacgacatgcctattggacgaaacgtcttggagcttacagacgtc
cggcagtcggccaactacacctgtgtggccatgtcaactctgggggtgatagaggctgtg
gcacagataacagtcaaagcattgcccaaggctcctggcattcctgtggtgacagagcgc
acagccaccagcataacactgacttgggactctggcaatcctgagccagtgtcctactac
atcatccagcacaagtccaaatactcagatgactcatacaaggagatcgacggtgtggcc
accactcggtacagcgtggggggcctcagcccatactcggactacgagtttcgggtggtg
gctgtgaacaacattggccgagggccacacagcgagagcattgaggccaaaacagctgag
caggcccccagtacggcaccaaggcaggtcagaggtcacatgctgagcaccaccacggct
gtcatccactgggatgaaccagaggaggcgaacgggcagatcatgggctaccgagtctac
tacaccatggattccacccagtatgtcaacctctgggaaaagcagattgtccgagggtcg
aattttgtcaccatccagggcctcatccccaataagacctactacatcaaggtgctggcc
tatacctcagttggtgatggaccactttctccagaccttcaaatcattgctaagacagga
gttccctcccaaccaactgacttcaagggagaagccaaatcagaaacaagcattctactt
tcatggatcgccccagcacagactggacaggaaaatcagatcacaggatatgaactgatg
tataggaagagggatgacaaagaggagaaacgtatcagttttgagccgacaacaacatac
ctactgaaggacttgaagcccttcactacttatactttccgtctggctgcccgtagtaaa
catggagtcggagcttacaccaatgagatctctgcagaaaccccacagacacaaccctcg
ggcccacctcaggaagtcaagtgccacagccccagctccaccagcatcctggtaagttgg
cggccacccccagtggaattacaaaatggaatcataacacaatacaccatccaatatgct
gcgactgaaggggaggataccactactcatcaaatctccagcatccctccggaaagctcc
cagtaccttttggaaaacttggaaaaatggacagagtaccgtgtgacggtcattgctcat
acagatgtcggagcaggaccagaaagtctgccacagctcatccgcactgaggaggatgtt
cctagtgggccacctcgtaaagttgaggtggaggctgtcaactcctcatcaattaaagtg
atctggcgctcaccgatgcccaccaagcagcacggtcagatccgagggtaccaggtgcac
tatgtcaggatggttaatggggagcccacaggacagccagtcatcaaggacatcctgatt
gatgatgcccagtgggaatatgatgattcaactgaacatgaaatggtcatcacagagctg
caggctgagaccacgtattcagttaccgtggcagcctacacgacaaagggtgacggtgca
cgcagcaagccaaagctgatcaccaccactggcgcagttcctgataaacctcggctaatg
gtcagcacaaccaacatgggcacggctctcctccagtggcatcccccagtattaacccat
gggcccctacaaggctatcgcctccgttttggccgcaaagatgtggatccactgactgtc
attgagttccctgagcgagagaaccactacactaccaaagagatccataagggagcctca
tatactttccgcctctctgcacgcaacaaggtgggctttggcgaagagacagtcaaagaa
gtcaccacaaatgaggatgttccaagtggctaccctcagagcattacagcagagggtgcc
accacctccaccattcaggttagctggcaacctgttttgctggcagagcgaaatggccaa
atagtaaaatacgctttgcagtataaggacatcaacagcccacgcagcccctcagaactc
ttcatcactgccccggaatcaacagtcatcctggatggccttaaggcagataccacttat
gatattaaaatgtgtgccttcaccagcaagggctctggtccctatagcccaagtgtccaa
ttcaggacacagcctttggatcaagcagtgtttgcaaaaaattttcacgtgaaagctgcc
atgaagacctcagtgttgctgacctgggaaatcccagacacctacaacccagcccaacct
ttcactatcctctacgataatggccagagcgtggaggtggatgggaagctaacacaaaag
ctaatcacaggtcttcaacctgagacacagtactccttcctcctgaccaaccgtggcaac
agtgccggaggtctgcagcaccgtgtgtccaccatgacggccccagacatccttcgcacc
aaaccatacctgattggcaagaccaactcagatggtatggtaactgtggagctaccatca
gtgcaaacatctgagagagtaaggggctattacattgtggttgtacctctgaagaagcag
cgtactggcaaatttttcaaaccctgggacaatccggatgagatgaatttggaggagctg
ctgaaggagataaaccgaactagcagaggccttcggctccggaggcaggcagaacccaaa
gcctatatcgctgcctacttcaaagacctgcctaaagagttcaccctgggagatggcaag
atctacggagactttgaaaacaagcaacttcagagtggccaggagtatatcttctttgtc
cttgctgttctggagatgtctgaaaacatcatgtatgccaccagcccctactctgacccc
gttgtttcagccgacattgacccccagccaatcattgatgaagaggaaggcctcatctgg
gtagtgggccctgtgttagcagttgtcttcatcatatgcatcgtcattgccatcctcctc
tacaagagaaaaagagcagaatctgaagctaggaaaggcagtctccccaacagcaaggaa
atgccactgcatcatcccactgaccctgttgagcttcgacgtctcaatttccaaacacct
ggttcaggtgcgcccagtcaccccagtaacctccatttgtcaagtatggcaagccaccct
ccaatcccaatcatggacctggcagatcatctggagcgcctgaaagccaacgacaacctg
aagttttcacaggaatatgagtccatcgatccaggtcagcagttcacatgggagcactct
aatctggaggttaacaaaccaaagaacagatatgccaacgtgattgcctacgaccattcc
agagtcttgctctctgctattgacggtatccctggaagtgactatatcaatgccaactac
attgatggctacaggaagcagaatgcctacattgccacccaaggatctctgccagagaca
tttggtgacttctggaggatgatctgggagcagaggagtgccatcattgtcatgatgacc
aaactggaggagaggtccagggtgaaatgtgaccagtactggcccacaagagggacagaa
acctacggtctcatccaagtgacactgctagacacagtagaactggcgacgtactgtgtc
aggacatttgcactttttaaaaatggctccagtgagaagagagaggtgaggcagttccag
ttcacagcctggccagaccatggggtaccagagcaccccactccattcctggccttcctg
agacgggtgaaagcttgcaatcctccagatgcagggcccatggtggtacactgcagcgct
ggggtgggacgtacaggttgcttcatcgtgattgatgccatgctggaacgtatcaagcac
gagaagactgtggacatctacgggcacgtaacgctaatgcgtgcccagcgcaactacatg
gtgcagacagaggaccagtacgtcttcatacacgacgcgctccaggaggccgtcaactgc
ggcaccaccgaagtgcccgccagaaacctatacgcctacatccagaaactgacgcagata
gaaggtggagagaatgtcaccggcatggaacttgagttcaagcgtttagctaacactaaa
gcccatacatcacgattcatcagtgccaatctcccctgcaacaagttcaagaaccgcctt
gttaacataatgccatacgagtctacacgagtgtgtcttcagcccattcgaggagttgag
ggctctgactacatcaatgccagtttcattgatgggtacaggcaacagaaagcctatatt
gccacgcagggaccactggcagagaccacagaggacttctggagaatgctctgggagcac
aactctactatcgttgttatgctcaccaagcttagagaaatgggcagggaaaaatgccac
cagtactggccagcagaaaggtcggccagataccagtactttgtggtggacccaatggcc
gagtataacatgccccagtatatcctgagagagttcaaagtgactgacgccagggatgga
cagtcacggacagtaaggcagtttcagttcacagactggcctgaacaaggagtgccaaaa
tcaggagaaggcttcatcgacttcataggccaagtacataaaacaaaagagcagtttggc
caagacgggcctatctcagtccactgtagcgcgggtgttggtagaactggagttttcatc
accctcagcattgtcttggaacgaatgagatatgagggcgtagtagacatctttcagaca
gtgaaaatgctacggacacagagaccagctatggtgcagacagaggatcaataccagttc
tgctacagagctggcttggagtacctgggaagctttgatcactatgcaacgtaa
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integrated database retrieval system
