Lates calcarifer (barramundi perch): 108892394
Help
Entry
108892394 CDS
T04895
Name
(RefSeq) 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1
KO
K01640
hydroxymethylglutaryl-CoA lyase [EC:
4.1.3.4
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00280
Valine, leucine and isoleucine degradation
lcf00650
Butanoate metabolism
lcf01100
Metabolic pathways
lcf04146
Peroxisome
Module
lcf_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
108892394
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
108892394
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
108892394
Enzymes [BR:
lcf01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.4 hydroxymethylglutaryl-CoA lyase
108892394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMGL-like
Motif
Other DBs
NCBI-GeneID:
108892394
NCBI-ProteinID:
XP_018545418
UniProt:
A0A4W6G7Z5
LinkDB
All DBs
Position
LG16_LG22:6868859..6883431
Genome browser
AA seq
335 aa
AA seq
DB search
MGNVPTTVKHCLSYEQLIQDYPWLRHWLQEKTITGHEYPEFVKIVEVGPRDGLQNEKEIV
PTGVKIQLIDMLSRTGLSVIEATSFVSSKWVPQMADHTDVLRGIQRASHVQYPVLTPNMQ
GFQDAVAAGATEVAVFGSASETFSKRNINCSIDESMLRFKEVINTAKEQQIPVRGYVSCA
LGCPHEGHIEPSKVAEVAKRLYDMGCYEISLGDTIGVGTPGSMLKMLQSVMKEVPTKALA
VHCHDTYGQALPNILTALQMGVCVVDSAVAGLGGCPYAQGSSGNVSTEDVLYMLHGMGIE
TGVNLAKVIDAGDFICNALCRKTNSRVAQARGRTP
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgggtaacgtacccactacagtgaagcactgcttgagctatgagcaactcatccaggac
tacccatggctgagacactggctgcaggagaagaccattacaggacatgagtacccagag
tttgttaaaatcgttgaggttgggccgagagatggacttcaaaatgaaaaggaaattgtt
ccgacaggggtgaaaatccagctgatagacatgctctcacgaacaggcctgtctgtgatc
gaggccaccagctttgtctcatcaaagtgggtaccgcagatggcagaccacactgatgta
ctcagaggaatccagagagcttctcatgttcagtaccctgttttgacacctaacatgcaa
ggcttccaggatgctgttgcagctggtgctactgaagtggcagtgtttgggtcagcgtct
gaaaccttcagtaaaagaaatattaactgctctattgatgaaagcatgctgaggtttaag
gaagtcattaacactgccaaagagcaacaaattccagtgcgcggatatgtttcctgtgcc
cttggatgcccccatgagggacacattgaaccctctaaagttgctgaggtagcaaagagg
ttatatgacatgggctgttatgagatttccttgggggataccatcggtgttggtactcca
ggttccatgttgaagatgctgcagagtgtgatgaaggaggtgcccaccaaagctctcgca
gttcactgccatgacacttatggtcaggcactgcccaacatcctaactgcacttcagatg
ggggtctgtgtagtggattccgcagtagctggcctgggaggctgcccgtatgctcagggt
tcatcgggcaatgtttcaacagaggatgttctctacatgctccatggcatgggcattgaa
acaggtgtaaacctcgccaaagttatagacgctggtgactttatctgcaacgctttatgt
cgcaagacaaactccagggttgcccaggccagaggcaggaccccgtga
DBGET
integrated database retrieval system
