Lates calcarifer (barramundi perch): 108892465
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Entry
108892465 CDS
T04895
Symbol
rtn1a
Name
(RefSeq) reticulon-1a isoform X1
KO
K20721
reticulon-1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108892465 (rtn1a)
03036 Chromosome and associated proteins [BR:
lcf03036
]
108892465 (rtn1a)
Membrane trafficking [BR:
lcf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
108892465 (rtn1a)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108892465 (rtn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Reticulon
RHD_RETREG1-3
DUF4736
Motif
Other DBs
NCBI-GeneID:
108892465
NCBI-ProteinID:
XP_018545540
UniProt:
A0A4W6FJ04
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Position
LG19:complement(11823707..11843618)
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AA seq
739 aa
AA seq
DB search
MSAQPGEELGSEGKWFGDDYERNGLFGNTPTRFDELREEFKPRGGEAESDLDQQFHPFQD
YGKRPPVAMETASTDDSMSGLFRKPMNDDGDVYTSLLSNQSFTSGREASYLSEDLKPSKP
STGSSALDHFSSDSYSFGSSTKMTSDLVDDMPKSLLGSDKTESYNYMDISHGDERHDQHQ
GAQHSLVDTSLAGRDLLGSYIDKNPGRDEEDEEEEEEENLGPALGSHSFPYVEEPSDEEL
SDYRSYRNLGGTPQTASPVKITLTESQPPPASKAELQQHPSPVSGSERENVLSVGLQGVP
TVTLSEPEDESPASTPNASPTQKEFSSHDIFKADAAKPAASKSGPGTKAGSGEHDGSSAE
SGDSEIELVSEEPPKASSNPFAQPPKSKGTFSQPNNPFDNPPVAKGGFGLAGNHAPPTAY
SILREEREAELDSDLFIESASEESPKREQGFSGPKQGVSPPSPLVPSVVPPRSTAEAAPA
ESLITTEKVKTPVKTEEDRPSKPKPPTAAVPPEVRLEKPHQDDMHKNTSEGKGDLGKPAT
SMFLEGFNKQKAIDLLYWRNVKQSGAVFSSVLLLLFSLTQFSVVSVGAYLALAALSATIS
FRIYKSVLQAVQKTDEGHPFKAYLEMEIALSQDQISKYADKILLYTNTCMKELRRLFLVQ
DLVDSLKFAVLMWLLTYVGALFNGLTLLILAVVSMFTMPVVYEKHQAQIDQYVGLIRTQV
NSVVGKIQAKIPGAKRKEE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctcaacccggtgaggagctaggctcggaagggaagtggttcggggatgactat
gagaggaacggcctgtttggtaacacaccgacccggttcgacgagctacgtgaagaattc
aagccgagaggcggcgaggcggagagcgacctggatcaacaatttcatccttttcaggac
tacgggaaaaggcctcccgttgctatggaaactgcatctacagatgactccatgtcgggc
ctgttcaggaagcctatgaatgatgacggtgatgtgtacacttccctgctgtccaatcag
agcttcacatcgggccgggaagcctcctacctatcagaagacttgaagccctccaagccc
tccactggctcatctgccttggaccatttctccagcgactcctacagcttcggctccagc
accaagatgacttctgaccttgttgatgacatgccaaaatctctgctgggctcagacaag
acagaatcctacaactacatggacatcagccacggggatgagcgccacgatcagcaccag
ggggctcagcacagcctggtggacacgagcctggctggtcgtgacttgctgggaagctac
atagacaagaaccctggcagagatgaggaggatgaggaggaagaggaagaggagaacctt
ggtccagcactgggctcccattcctttccctacgtggaagagccatctgatgaagagctg
tcagattatcgctcctaccgaaacctgggcggcaccccgcaaacagccagcccggtgaag
atcaccttgaccgagtcccagcctcctccagcttccaaggctgagctgcagcaacacccc
tctccagtcagcgggtctgagcgtgaaaacgtactcagtgtgggcttgcagggggttcct
actgtgacactatcagagccagaggatgagagccctgcttccactcccaacgcttcgcca
acacagaaagaattctcttcccatgacatattcaaggctgatgcagcgaagcctgcagct
tccaaaagcggtccaggcacaaaggccggcagcggggagcacgatggcagcagtgcagag
tctggagactcagagatcgagctggtgtctgaggagcctcccaaggccagtagcaaccca
tttgcccagccgcctaaaagcaagggcactttcagccagcctaacaacccgtttgacaat
ccccctgtcgccaagggtggttttggcctggctggcaaccacgctccacctacagcctac
agcattctgagggaagagagagaggcagagcttgacagtgatctcttcattgagtctgca
tcagaagagagcccaaagagagagcagggcttcagtggccccaaacagggagtcagccct
ccctctcccctggttcccagcgtcgtccctccccgcagcacggctgaggcggcgccagct
gaatccctgatcacaacagaaaaggtcaagaccccagtgaaaacagaggaggatcgcccc
agcaagcccaagcccccaactgcggctgtgcccccagaggtgcgattggagaagccccat
caggacgacatgcacaagaacaccagtgagggcaaaggagatcttggaaaacctgctaca
tcaatgtttctggagggctttaacaaacaaaaagcgattgacctgctctactggaggaat
gtgaagcagtctggggccgtgttcagcagcgtgcttctgctcctcttctccctgacccag
ttcagcgtggtcagcgttggagcctacttagccctggcagctctctctgccaccatcagc
ttcagaatctacaagtctgtgctgcaggctgtgcagaagaccgatgaggggcatcctttc
aaagcctacctggagatggaaatcgctctgtcccaggaccagattagtaaatatgccgac
aaaatcctgctgtacaccaacacctgtatgaaggagctccgcaggctgttcctcgtgcaa
gatctggttgactccttaaagtttgctgttctgatgtggctgctgacctatgtgggcgct
ctcttcaacggcctgacactgctcatcctagctgtggtctccatgttcaccatgcctgtg
gtttatgagaaacatcaggcacagatcgatcaatacgtgggactaatacggacccaggtc
aactctgtggtggggaagatccaggcgaagatccccggggccaagaggaaggaggagtag
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