Lates calcarifer (barramundi perch): 108892479
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Entry
108892479 CDS
T04895
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04137
Mitophagy - animal
lcf04140
Autophagy - animal
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108892479 (hif1aa)
04137 Mitophagy - animal
108892479 (hif1aa)
04148 Efferocytosis
108892479 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108892479 (hif1aa)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
108892479 (hif1aa)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
108892479
NCBI-ProteinID:
XP_018545560
UniProt:
A0A4W6FRV3
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Position
LG19:12037847..12051238
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AA seq
759 aa
AA seq
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MDTGIVPEKKRVSSERRKEKSRDAARCRRGKESEVFYELAQQLPLPHSVSSSLDKASIMR
LTISYLRMRKLLSTDDPMAEEETELDIQLNSSYLKALDGFLMVLSEDGDIIYLSENVNKC
LGLAQFDLTGHSVFDFTHPCDQEELREMLVHRTGSKKTKEPNTERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRVYDTHTEQSTNGHKEPPVPYLVLICDPIPHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLTKTHHNLFAKGQV
STGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLILSLEQTEDV
KPVKEEKQEEEKVVVESSSPDMSPALLKQEEEEKSPELDVIKLFTQTVEARPQASLYDQL
KEEPEALTLLAPAAGDTIIYLDFSCPDSEIQQLKDVPLYNDVMLPSSSERLALPLSPLPP
SEPLHVTTTTTSEDVKTESYAPAPSTTPTSHSSTEADSPLDFCFPMDSDMSSDFKLDLVE
KLFAIDTEPKTPFTTQAMQDLDLEMLAPYIPMDDDFQLRSLTPEEPLSCGPVKSLNSSPV
HITQDINSYPSSPFSSAGSRTASPAPPEPVSAPHPATIIAKRTPQLDKEVSLRTLAAQNA
QRKRKLGDIKEIIGQGSLPDDQLEQGKKLKASESGTTRTILLLPSDVASRLLGCTSDGTS
SPFTLPQLTRYDCEVNAPLQGRQYLLQGEELLRALDHVN
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaattgtacccgaaaagaaaagagtgagctcagagcggaggaaggagaag
tcaagggatgcagcgcgatgccggcgtggaaaggagtcggaggtgttctacgagctggcc
cagcagctgcccctgccccacagcgtcagctccagcctggacaaggcctccatcatgagg
ctcaccatcagctacctgcgcatgaggaagctgctcagcactgatgacccaatggcagag
gaggaaacagagttggatatccagctaaacagctcctaccttaaggccctggacggcttt
ctcatggtgctgtctgaagacggagatattatctatctttctgagaatgtcaacaagtgc
ctcgggctggcacagtttgacttgactggacacagcgtgtttgacttcacacatccctgt
gaccaagaggagctgagggagatgctggtccacagaacaggctccaaaaagaccaaggaa
ccaaacacagagcgcagcttcttcctccgaatgaaatgtactctgacaagcaggggccgc
actgtcaatgtcaagtcagctacatggaaggtcctccactgctcaggtcatgtgcgtgtt
tacgacacccacactgagcagtctaccaacgggcacaaggagccacctgtcccctacctg
gttttgatctgtgaccccatcccacacccctccaacattgaggtcccactggacaccaag
acctttctcagccgccacacaatggacatgaagttcacttattgtgacgagaggatcact
gagctcatgggttacgatccagaagacctgttgaatcgttctgtgtatgagtactatcac
gctctggactctgaccatcttaccaagactcaccacaacttgtttgcaaagggccaggtc
agcacaggacagtaccggatgttggccaagagaggaggctttgtgtgggtggaaacccaa
gccactgtcatctacaacaacaagaactcccagccacagtgtgttgtctgtgtcaacttt
gttctcagtggcatccaggaggagaaactgatcttgtctctggagcagacagaggatgtg
aagccggtgaaggaggagaaacaggaggaagagaaagttgtggtggagagcagttcacct
gacatgtctccagccctgctgaagcaggaggaggaggagaagagcccggagctggacgtg
atcaagctgttcacccagaccgtggaggcccggccgcaggctagcctgtacgaccagctg
aaagaggagcccgaggccctcaccctgctggccccggccgctggagacacaatcatctac
ttggacttcagctgccctgattcagagatccagcagctgaaggatgtccctctctacaat
gatgtaatgcttccctcctccagtgagaggctggctctgcctctttcccccctgccgccc
agcgagcctctccacgtcaccaccaccaccacctctgaggatgtaaaaactgagagctat
gctccagctccgtccactacaccaaccagccacagctccacagaggctgacagtccattg
gacttttgtttccccatggactcagatatgagctcagacttcaaattagacttggtggag
aagctgtttgccattgatacagagcccaagacccccttcaccacacaggcgatgcaagac
ttggatcttgaaatgttggctccctacatccccatggacgatgacttccagctgcgcagt
ttgaccccagaggagcccctgtcatgtggaccagtcaagtccctcaacagttctccagtc
cacatcacacaggacataaacagctatcccagctctccattcagctcagcaggcagtcgc
acagcttccccagcaccacctgagcctgtgagcgcccctcatcctgccaccatcattgct
aagaggaccccacagttggacaaagaagtctcgctcaggaccttggcagcgcagaacgca
cagcgcaaaagaaaactgggtgacataaaggagattattgggcaggggagtttgcctgac
gatcaattggagcagggcaaaaagctgaaggcctccgagtcaggaacaaccaggaccatt
cttctgctgccttcagacgtggcgagtcgtctgctgggctgcacatcagatggcaccagt
tctcctttcaccctgccgcagctcacccgctacgactgcgaggtcaacgcccccctgcag
ggccgtcagtacctgctgcagggggaggagctgctgcgcgcactggaccacgtcaactga
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