Lates calcarifer (barramundi perch): 108892563
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Entry
108892563 CDS
T04895
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
lcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108892563
09124 Replication and repair
03420 Nucleotide excision repair
108892563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108892563
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108892563
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108892563
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108892563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
zf-C3HC4
TRAF3_RING
zf-UDP
zf-RING_2
zf-P11
Motif
Other DBs
NCBI-GeneID:
108892563
NCBI-ProteinID:
XP_018545712
UniProt:
A0A4W6FIJ9
LinkDB
All DBs
Position
LG19:11957123..11989057
Genome browser
AA seq
311 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCENCVEMLFVRGSGNCVQCDTPLRKSNFRV
QLFEDPTVDKEVEIRKKVLKIYNKRDFDFPSLREYNDYLEQVEDIVYNLTNNIDVENTKL
RMEQYQRENRDLIQRNKATLTREQEELEELLLLEQQGNEQRRLEVLQEEQRQLQAKRKNK
QALLDELEQSQLPATILLAQHKVRAAQLETQIEQQKQTVKPTNLFSTGIHMRQTVSLMAV
PKVEEVLYHYKPLQVKTYGPPVPELEQLGRLGYLNHVRAAMPQDTAGGYTSALACHRAVQ
DAFSGLFPPKG
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggatgaccaggggtgtccgagatgcaaaacaaccaaatacaggaacccgtcgttgaag
ctgatggtgaacgtctgcggccacacgctatgtgagaactgcgtggagatgctgtttgtg
cgcggctcaggcaactgcgttcagtgcgacacacccctgaggaagagcaacttccgagtg
cagctcttcgaagacccgaccgtagataaggaggtggagatccgcaagaaggtgctgaag
atatacaacaagagagattttgacttccccagccttagagagtacaacgactacctggag
caagtggaggacatagtgtataacctgacaaacaacattgacgtggagaacaccaagctg
aggatggagcagtaccagagggagaacagagacctcatccagaggaataaggctacactt
acccgagagcaagaggagctggaggagctgctgttgctggagcagcagggcaatgagcag
cggaggctggaagtgctgcaggaggagcagaggcagctgcaggccaagaggaagaacaag
caggctctgctggacgaactggagcagtcccaacttcctgccaccatcttgcttgcccaa
cacaaggtccgtgctgcccagctcgagacccagatagaacagcagaaacaaacagtcaaa
cctacaaatctattttcaactggaatccatatgcgtcagacggtgtctctcatggctgtg
cccaaggttgaggaagtgctgtaccactacaagcctcttcaagttaaaacctatggacct
ccagtgccagaattggaacagctgggcagacttgggtatctgaaccacgtgcgggccgcc
atgcctcaggacacagctggaggatacacctcggctttggcgtgtcatcgagccgttcag
gatgctttcagcgggctgttccctccaaaaggctaa
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