Lates calcarifer (barramundi perch): 108892622
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Entry
108892622 CDS
T04895
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108892622
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
108892622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108892622
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
108892622
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
108892622
NCBI-ProteinID:
XP_018545799
UniProt:
A0AAJ7VBV3
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All DBs
Position
LG16_LG22:complement(244804..267646)
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AA seq
909 aa
AA seq
DB search
MAGALRMSEPQFINVYDNDLQLNLMPYDYIPPVDIKTEPYIPETAHGPYIQIIEEPKQRG
FRFRYECEGPSHGGLPGASSEKNRRTYPTVKINNYVGHARVEVQLVTHTDPPRVHAHSLV
GRHCTEKGTCTLDVGPNDLTASFSNLGILHVTKKGVVEILHKRLKDEKKRQKGPHSTLTD
LEESACLKEAKELGKVMDLNIVRLKFTAYLQDSNGGFTRALKPVVSNPIYDSKSPNASNL
KISRMDKTCGSVLGGDEIFLLCDKVQKDDIEIRFYEEDEEGGWEAFGDFSPTDVHKQYAI
VFKTPPYHSTEIERPVTVFLQLKRKKAGDSSDPKQFTYIPQVQDKEEVLRKKQKPLPHYE
PWRGGGGGGRGGGAGGFGGGGAGGGGGFQFNQQMNGGGGGGTGGVFFTGGFTGFGGGGGA
QMSGSTPQTGVTQQQTDGQTGGQTGGQTGSPLQQQLYQIAAALHSRASQSARQTAAALLQ
YCSTGDARVLLAIQRHLCGVQDSNGDTPLHLAIIHQQTGVIQQLIHTLLSSQQQNILNTA
NHLRQTPLHLAVITRQVKVVEVLLRAGADPSLVDKDGRSPLHLAALAGDNATLRPLLAHL
GERHAHLVNTPDYHGLHPLHLAVRRDGERCLRLLVEGGAKINAPEQKSGNTALHLAVREN
LFKVACTLITELKADVNACTFGGNTPLHLAASLGSPTLCSMLIAAGADKNIENDEPLFFS
YSSDEEKDEDEPEEVREPEAAASQTINPRKRPAGHTPLDLAKCQKVRNLLNSRQSPKSSR
HCSKRIKPSSSEEVEGSGLDEETLSRLVEVLSVGDVPWRKLAEKLGMMTLTHLYQDSPTP
CHHLLQHYKLGGGPVEGLVEALQSLGLSEGVRLLRNNELRDDKHSTDATVDSGFGSQPME
EEEPSVANQ
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggccggagctctgaggatgagtgaacctcagttcatcaacgtctacgacaatgatctg
cagctgaatttgatgccgtacgactacattcctcccgtggacataaagactgaaccctac
atacctgagacagctcatggtccttatattcagatcatagaagagccaaaacagaggggc
tttcgtttccgttatgagtgcgagggtccgtcccacggtgggctgccaggggcctccagc
gagaagaaccggagaacctacccaaccgtgaagattaataactacgtgggtcacgcccgg
gtggaggtccagctggtgacccacaccgatcctcctcgtgtccacgcccacagcctggtg
ggacgtcactgcacagagaagggcacctgcacgctggacgtcggccccaacgacctcacc
gcctcgttcagtaacctggggatcctccatgtgaccaagaaaggtgtcgtggagattttg
cacaagaggctgaaagatgagaagaagagacagaaaggaccacacagtaccctgacagac
ctcgaggagagcgcctgtctgaaagaggccaaggagctggggaaggtgatggacctgaac
atcgtcaggttaaagttcaccgcctacctgcaggacagcaacggaggattcacccgagca
ctgaaacctgtcgtgtccaacccgatctacgacagcaaatctccaaacgcctccaacctg
aaaatctctcggatggataagacgtgcggctcggtgctcggaggagacgagatcttccta
ctctgtgacaaagtgcagaaagacgacatcgagatccgtttctacgaggaggacgaggag
ggaggctgggaggcgttcggtgacttctcacctaccgacgttcacaaacagtacgccatc
gtattcaaaacgccgccgtaccacagcacagagatcgagcgtcccgtcaccgtcttcctg
cagctgaagagaaagaaggccggcgacagcagcgacccgaaacagttcacctacatacca
caggtccaagataaagaggaggtgctgaggaagaagcagaagccgttgcctcactatgaa
ccctggagaggagggggaggaggcggacgaggtggaggagccggtggtttcggaggagga
ggagctggaggaggaggaggattccagttcaaccagcagatgaacggaggaggaggagga
ggaacaggaggagttttcttcactggaggtttcacaggcttcggtggagggggaggggct
cagatgtcaggctccacccctcagacaggtgttacccagcaacagactgatggacagact
ggaggacagaccggaggacagactggatcaccactacaacagcagctctatcagattgct
gcagctcttcacagcagagcctctcagagcgccagacagaccgccgccgccctgctgcag
tactgcagcactggggacgcccgggtcctcctggcgatccagagacacctctgtggtgtc
caggacagcaacggagacactcctctacacctggccataatccaccagcagacaggtgtg
atccagcagctgatccacactctgctcagcagccagcagcaaaacatcctcaacacagcc
aaccacctcagacagactcctctccacctggcggtgatcacccggcaggtgaaggtggtg
gaggtgttgctgagggcaggggccgaccccagcctggtggacaaggacggccgcagcccc
ctccacctggcagcgctggccggagataacgccacactccgccccctgctggctcacctg
ggagaacgccacgcccacctggtcaacacgcccgactatcacggtcttcatcctctccac
ctggcggtaaggagggacggcgagcgctgcctccgcctgctggtggagggtggagccaag
atcaacgctcctgagcagaagagcggaaacactgccctccacctggccgtcagagaaaac
cttttcaaggtggcctgcaccctcatcacagagctgaaggcggatgttaacgcctgcacg
tttggaggaaacacaccgctccacctggcggccagtctgggctcaccgaccctctgctcc
atgctcatcgctgcaggtgctgataagaacatcgagaacgacgagccgcttttcttcagc
tactcgtcagatgaagaaaaagacgaggacgaaccagaggaagtcagagagccagaggcc
gccgcctcacagacaatcaaccctcgtaagagacctgcaggacacacccctctggacctc
gctaaatgccaaaaggtgaggaacctgttaaactccagacagagtccgaagtcaagtcgt
cactgcagtaaaaggatcaaaccgagcagcagcgaagaggtggagggttctggtctggac
gaggagacgctgtcccggctggtggaggtgctgagtgtcggagacgttccctggaggaaa
ctggcggagaagctggggatgatgacgctgactcacctgtaccaggacagtccgacaccc
tgccatcacctgctgcagcactacaagctgggcgggggtccagttgaaggtctggtcgaa
gctcttcagtctctcggtctgtcggagggagtccggctgctcaggaacaacgagctacga
gacgacaaacacagcacagacgccacggtcgacagcggattcggcagccagccaatggaa
gaagaggagccgtctgtggccaatcagtga
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