Lates calcarifer (barramundi perch): 108892677
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Entry
108892677 CDS
T04895
Name
(RefSeq) cGMP-gated cation channel alpha-1
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
108892677
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108892677
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
108892677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
EMC3_TMCO1
Presenilin
Sec62
MDM10
DUF3043
NPR3
CDC45
PIP5K
Mat89Bb
GmrSD_N
CAF1A_acidic
RR_TM4-6
DUF6474
NatA_aux_su
ALMT
Motif
Other DBs
NCBI-GeneID:
108892677
NCBI-ProteinID:
XP_018545888
UniProt:
A0AAJ7VC19
LinkDB
All DBs
Position
Unknown
AA seq
639 aa
AA seq
DB search
MAKVGPLAPPSTSRLTPPTIVLQDMEEEPSDNRAAQRAGAGVLFNVNNSNNNEEDEEKKK
KKKEKKEKKEKKEKEKQEKKEKKEKKKKEKEEKEKEKEKEKEKEKEKEKEKKDQPPKEIT
VIDPAGNTYYHWLAVITIPVMYNWTLIIARACFEELQTDYVYYWFFVDFFCDLVYLADMV
FRTRTGYLEQGLLVKDEQKLRERYKKSFQFKLDLISMIPTDILYLVVGLSYPEIRLNKLF
RFNRMLEFFQRTETRTNYPNALRISNLVMYIVIIIHWNACLYYSFSKAIGFGADRFVYPD
PSDPEFGRLVRKYAYSMYWSTLTLTTIGETPPPVENSEYFFVVTDFLVGVLIFATIVGNV
GSMITNMNAARADFQARIDAIKQYMSFRKVTKDLEKRVIKWFDFLWTNKKAVDEREVLKY
LPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREM
YIIKEGKLAVVADDGITQFVVLSDGSYFGEISILAIKGSKAGNRRTANIRSIGYSDLFCL
SKDDLMEALKEYPDAKALLEEKGRQILMKDGLLDLEVAAQGPDPKEIEEKVERMTSTLDV
LQTRYARLLAEHEATHSKLKHRVARLEKKLPRPPLPPEA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagtaggtcctttagccccgccctccacctccaggttaactccgcccaccatc
gttctgcaggacatggaggaggagccaagtgacaacagagctgctcagagagcaggagca
ggagttttgttcaacgtcaacaacagcaacaacaacgaggaggatgaggagaagaagaaa
aagaagaaagagaagaaggagaaaaaagagaagaaggagaaggagaagcaggagaagaag
gagaagaaagagaagaaaaagaaggagaaggaggaaaaggaaaaggagaaggagaaagaa
aaagagaaggagaaggaaaaggagaaggagaagaaagaccagccgcctaaagagatcaca
gtgatcgatccggccggtaacacctactaccactggctggccgtcatcaccatccccgtc
atgtacaactggaccctgatcatagccagggcgtgtttcgaggagctgcagaccgactac
gtgtactactggttcttcgtagactttttctgtgacctcgtctacctcgctgacatggtc
ttcagaaccaggactggttacctggagcagggtctgctggtgaaggatgagcagaagctg
cgtgagcgctacaagaaaagcttccagttcaaactggacctgatctccatgattcccacc
gacatcctgtaccttgtcgtcggcctcagttaccccgagatccgcctcaataaactcttc
aggttcaacaggatgctggagttcttccagaggacagagaccaggaccaactaccccaac
gctctccgtatctccaacctcgtcatgtacatcgtcatcatcatccactggaacgcctgc
ctctactactctttctccaaggccatcggtttcggcgcagacaggtttgtgtatcccgac
ccgtcagatccagagtttggtcgcctggtgaggaagtacgcctacagtatgtactggtcc
acgctgacgctcaccaccatcggagaaacaccgccccctgtggagaactcagagtacttc
ttcgttgtcactgacttcctggtgggagtgttgatttttgccaccatcgtcggtaacgtt
ggttcgatgatcaccaacatgaacgctgccagagccgacttccaggctcgcatcgatgcc
atcaaacagtacatgagcttccgaaaggtcactaaggacctggagaagcgagtgatcaag
tggtttgacttcctgtggaccaataagaaagcagtggatgagagggaggtgctgaagtac
ctgcccgacaaactgagggctgagatcgccatcaacgtccacctggacaccctgaagaag
gttcgtatctttgcggactgcgaggccggcctgttggtggagctggtgctgaagctgcag
cctcaggtctacagtccaggagactacatctgtaagaagggcgacatcggcagggagatg
tacatcatcaaggagggaaaactcgccgttgtcgctgatgacggcatcacgcagtttgtc
gttctgagcgatggaagctactttggcgagatcagcatcctggctattaaaggcagtaag
gcaggaaacaggaggacggcgaacatcaggagcatcggctactccgacctcttctgtctc
tccaaagacgacctgatggaggcgctgaaggagtatcctgatgctaaggctctgctggag
gagaagggacggcagattctgatgaaggacggactgctggacctggaggtggcagcacag
ggtcccgaccccaaagagatcgaggagaaggtggagaggatgacgagcacgctggacgtc
ctgcagacgcgttacgcccggctgctggccgagcacgaagccactcacagcaaactcaaa
cacagagtcgcccggctggagaagaagctgccgcggccgcctctgccacctgaggcttag
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