Lates calcarifer (barramundi perch): 108892830
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Entry
108892830 CDS
T04895
Symbol
ddx3xb
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
108892830 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108892830 (ddx3xb)
03041 Spliceosome [BR:
lcf03041
]
108892830 (ddx3xb)
03036 Chromosome and associated proteins [BR:
lcf03036
]
108892830 (ddx3xb)
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108892830 (ddx3xb)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108892830 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
108892830 (ddx3xb)
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108892830 (ddx3xb)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108892830 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108892830
NCBI-ProteinID:
XP_018546082
UniProt:
A0A4W6F0C5
LinkDB
All DBs
Position
LG7_2:6167823..6190812
Genome browser
AA seq
740 aa
AA seq
DB search
MSHVAVENAHGLEQQLAVLDLSAADGQGGGNSRRYIPPHLRNKDASKNAGNAFAAGRQGG
YTIAPPANYGWDGGRNNFVNGYHDNRMTGNSFNRGPPRMERGRGGVGGGGYRGNRGGSFN
PINPAQPMGFGGYENKDTGGWNTAKDAYSSFGNNRGKSAFFNDRGNANRGRFDHGGFGGG
GGGGNSRWVEESRDDGDWSKPTPRNERLEHELFSGSNTGINFEKYDDIPVEATGQNCPHH
IESFQDVDMGEIVMGNIALSRYTRPTPVQKYAIPIVKAKRDLMACAQTGSGKTAAFLLPI
LSQIYTDGPGEALNAAKASGQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSR
VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLD
MGFEPQIRRIVEQDTMPHKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSEN
ITQKVVWVEESDKRSFLLDLLSATVIPSEVQDNTGDNIEKPGKDSLTLVFVETKKGADAL
EDFLYREGYACTSIHGDRSQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFD
LPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYE
HQHKSSNRGRSKRFSGGFGARDYRQTAAGANTGGFGGRGSRSQAGHGGNRGFGGGGFGNF
YTSDGYGGNYSHSQVDWWGN
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgcccacggtctagagcagcagctcgctgtcctagac
ttgagtgcagcagacggacaaggtggaggcaatagcaggcgatacattcctccacattta
cggaacaaagacgcttccaaaaatgcaggaaatgcctttgctgctggtcgacaaggtggc
tacaccatcgcacctccagccaactacggttgggacggggggcgcaacaactttgtcaac
ggctaccatgacaaccggatgaccggcaactcatttaaccggggcccgcctcgcatggag
cggggccgaggtggcgttgggggaggtggttaccgcggcaacaggggaggatcctttaac
cccatcaacccagcacagccaatgggatttggtggctacgaaaataaagacacaggcggc
tggaacacggccaaagacgcctatagcagttttggcaacaaccgagggaagtctgcattc
ttcaatgacagaggcaacgctaatagagggaggttcgatcacggtgggtttggtggtgga
ggaggagggggaaacagccgctgggtcgaggagtccagagacgatggagactggtccaaa
ccaactccacgtaatgaacgccttgaacatgagttgttctccggcagcaacactgggatt
aactttgagaaatacgatgacattcctgttgaggccacaggacagaactgccctcaccac
attgagagtttccaagatgtggacatgggtgagatcgtcatgggtaacatcgctctgagt
cgctacaccagaccaacccctgtccagaaatatgccattcctattgtcaaggcaaagaga
gacctcatggcctgtgcacagacaggctctggaaagactgcagcgttcctgctgcccatt
ctcagccagatctacactgatggaccaggagaagcccttaatgcagctaaagcctctgga
caggagaatgggaaatatgggcgtcgtaagcagtaccccatctctctggtactggctcca
accagagaactggcattgcagatatatgatgaagccaggaagttttcctaccggtccaga
gtgcgtccctgtgtcgtgtacggaggagcagatattggccagcagatcagagacctggag
agaggctgccacctgctggtggctacaccaggaagactggtggacatgatggagagagga
aagattggactggactactgcaactacctggttctggatgaggcagatcgtatgttggac
atgggctttgaaccgcagattagacgcatcgtcgaacaagacaccatgccacataaaggc
atccgacaaaccatgatgttcagcgccacctttcctaaagagatccagatcctggccagg
gatttcctggaggagtacatcttcctggcggtgggccgagttggttccacgtcagagaac
atcactcagaaagtggtgtgggtggaggagagtgataagaggtccttcctcctggacttg
ctcagcgctacagtcatccccagcgaggtacaggacaatactggagacaacatagagaaa
cctggtaaggactcgttgactctggtttttgtggagaccaagaaaggtgcagacgccttg
gaggacttcttgtatcgggagggctacgcctgcaccagtatccatggcgaccgctcccag
agagacagagaggaggccctgaaccagttcagatcaggaaaatgccccattctggttgcc
acagcggtagcagctcggggtctggacatctccaatgtgaaacatgttattaactttgac
ctgcccagcgacatagaggagtatgtccaccgtattggacgtacaggacgagtcggaaac
ctgggactggccacatcgttcttcaatgataagaacggtaacatcactaaagacctgctg
gacatcctagtagaggccaaacaggaagttccctcatggcttgagagcctggcctatgaa
caccagcacaagagcagcaacagaggacgctctaagaggttttctggaggttttggagca
cgtgattatcgccagacggccgctggagccaacactggagggtttggaggacgtggaagt
cgcagccaggcaggacatggaggaaaccgtggcttcggaggaggtggttttggtaacttc
tacaccagtgacggctacggaggaaactactcacactctcaagttgactggtggggcaac
tag
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