Lates calcarifer (barramundi perch): 108892904
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Entry
108892904 CDS
T04895
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108892904 (sox1b)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108892904 (sox1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
SelP_N
Motif
Other DBs
NCBI-GeneID:
108892904
NCBI-ProteinID:
XP_018546198
UniProt:
A0A4W6EPT3
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Position
LG7_2:6475272..6479711
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AA seq
351 aa
AA seq
DB search
MYSIMMETDLHSPVVPQTNPSNPGGHGGGGGAGGKVPQERIKRPMNAFMVWSRGQRRKMA
QENPKMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLL
KKDKYSLAGGLLGSSAGVGMGGGQRLESPGGGHAGNAGYASHVNGWANGTYSGQVAAAAA
AAHAMMQEAQLAYTQHPGTGAHPHHPHPHHHPHHHPHNPQPVHRYDMSALSYSPISNSQS
YMSASPPGYGGITGYTHQHQSSGVSPVSGAIGGTLGSLVKSEPSVSPPVSTARAPPPCPT
GDLRDMISMYLPTGEAVGDSSVQSRLHVLHPQHYQSSGSTPVNGTVPLTHI
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatcatgatggaaacggacttacattcccccgtggtgccccagaccaaccca
tccaacccggggggacacggcggaggcgggggggccggaggcaaagtcccccaggagagg
atcaagagacccatgaacgccttcatggtctggtcccggggccagcggaggaaaatggca
caggagaaccctaagatgcacaactctgagatcagcaagcggctgggcgcggagtggaag
gtgatgaccgaggcggagaagagaccgttcatcgacgaggcgaagcggctccgggccatg
cacatgaaggaacacccggactacaagtaccggccgcggaggaagaccaagacgctgctg
aagaaggacaagtactcgctggccggcgggctcctcggctcctccgcgggcgtggggatg
ggcggcgggcagcggctggagagccccggaggcggccacgcggggaacgcaggctacgcc
tcgcacgtgaacggctgggcgaacggcacgtactctggccaggtggctgccgcggctgcg
gcggctcacgcgatgatgcaggaggcgcagctggcttacacgcaacacccgggcaccggg
gctcacccgcaccacccgcacccgcaccaccacccgcaccatcacccgcacaacccgcag
cccgtgcacaggtacgacatgagcgccttatcttacagccccatctcaaactctcagagc
tacatgagcgcctctccgccgggctacggcgggatcaccggctacactcaccagcaccag
agctccggtgtttccccggtgtccggagcgatcggagggactctggggtccctcgtgaaa
tctgagcctagcgtgagcccaccggtttccaccgcgcgcgcgccgccaccgtgccctacg
ggggacctgcgggacatgatcagcatgtatctgccgaccggcgaggcggtgggggactcc
tccgttcagagcagactgcacgtgctccacccgcagcactaccagagcagcggctccact
ccggtaaacgggacggttcctctgactcatatttaa
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