Lates calcarifer (barramundi perch): 108892970
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Entry
108892970 CDS
T04895
Name
(RefSeq) DENN domain-containing protein 4C isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108892970
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
108892970
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DENN
dDENN
uDENN
DUF2464
PPR_2
PPR_long
PPR_3
PPR
Peptidase_C50
Motif
Other DBs
NCBI-GeneID:
108892970
NCBI-ProteinID:
XP_018546269
UniProt:
A0A4W6ECR0
LinkDB
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Position
LG15:19024665..19056403
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AA seq
1918 aa
AA seq
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MIEDKGHRVTDYFVVAGLTDKSTPLEQDLSETKSSGPKAPITDLAVINRSAGETVPEGFT
CIDSTYSGQPANLNHGSLKSPELFLCYRRGRGKPPLIDIGVLYEGKERLIQGCEVIQATP
YGRCANVNNSSATSQRIFITFRRAPPVQPQNSLAVTDICVIVTSKGETPPHTFCKVDKNL
NCGMWGSSVFLCYKKSVSASNSISYKAGLIFRYPEEDYESFPLSESVPLFCLPMGAKIEC
WAPNTRDPLPVFSTFVLTISSGEKVYGSAIQFYEPYSVDQLSEKQKIQLGLLTTVEKKMI
PNRPVNTNKCICLLSRWPFFESFRKFLMFLYKLSVSGPHPLPIEKHISHFMHNVSFPSPQ
RPRILVQLSAHDTLILSQPVCTPLPLSGADYGTLLMNLGSENCATLLHFVLLESKILLHS
LRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLNAPCPFIVGVDSRYFDLYDPPP
DVVCVDLDTNTIYLSDEKRHSNWKNLPKKPCKSLINSLSNLHHQLATVSVRQTAQENSAV
DMTPIEADFTWHKKKTALEMEIQEAFLRFMASILKGYRSYLKPITQAPSEKATAADSLYD
LQGFLKSRDRAHQKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCVEKLFPSDKITD
KGTKVEGESSEDTRLLELDESQKSEHTVFVMPPEPPADDGPDPAVRYTYKGFPGLLIDLF
DRPRVLRPALSSRAAGASLSSSPALLAKRTKQEIKLAYKMAKRFYSNPPLWARCLFSHCY
SLWFICLPAAVRLAKSKSRAMQQAYNVLLKMRTTEVEVLDEVCYRVVMQLCGVWGLPVMA
VRVLVEMKKAGVHPNAITYGYYNKAVLESPWPSRNRSGQFMWTKLRNVLRGVAQFKHALN
RTASKKGPTLSATAASKGGSAVTDADRLSHGSADSSNDVNGEVFVHDHGMEDATDNHCSA
GRQSDQGYGSKDELHQELAEPSHAAVLSAEERNNAKAQRNGDDIAGSVDSAVAVAEPPSP
VDVPSPVPSIVKLSTGSFDGETGTGKLFRRHSKNDNVSLPDDDAPLASGEVVNQPQQQRQ
KSFTERSCSFSAETRAGMLLEKGVDHMASQMGADARILTAALSPPPSSVSRTLFKDLEEE
PEDDRGLILGKVPVEEEPEAPEKGKGDDKDAEGAEVKDEKEERKQDEAQEDESGVRGATL
ERADVEVGADPLSRLVSESEESASVTSQEPPRPMPAVVSRNLAEEIEMYMSLRSPLGIKS
SSMELQQSQGDSTDAPQPKQTMERRSSLPVPPIKTPSGSPGDTAKRSPSTVTRSKTFAAK
TKTPAGNTASPGVRSSSLTALVKSSQGGSLGSVINTISGIKMDTLLSGPKIDVLKSSMKQ
AANVASKVWGAVASAYSYSDDEDEQAQGGGGFPARLDEHMLAAHDIDESPERGAIPGLVA
NGLNQSCTSLGSSSGSSDTGRGTHQTHPTPGRAGRGPDSEQGSSHHASSSSIYQNCALEV
LMSSCSQCRSCEALVYDEEIMAGWTADDSNLNTNCPFCRTAFLPLLHIEFHDLRTMTGFY
VNPSASGDSIHSTSTQPTASSSVDIKTPDLISFPEEEPRETPDNHPGAHKSLVPEPVQSD
PLGLLEHHAAGKQQRCSGTSLTRSNSVGGPLQSLDYSQRPGHGVSTTSLPCSLQEVSDGM
GTKRPNPKPVSVPYLSPLVLRKELETLLENEGDQVIYTHKFLSQHPIIFWNLVWYFRRLD
LHTHLPGLILTSEHCNNGVQLPLTSLSQDSKQVYIQLLWDNINLHQEPGDPLYLLWRTLL
EKKGTLAPTDHQEIRTLLNTIVRNIQTNDVYGPINLLIREIKRRPEGVKRQRSIYREILF
LSLVALGRENIDVEAFDREYRLAYDELSAEQLKSLHRIDRPPSPSVQWCLKCFGAPFI
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaggacaagggtcaccgcgtgaccgactactttgtggtggccgggctgacagac
aagtccacgcccttggagcaggatctgtccgagaccaagtccagcggtcccaaagcgccc
atcacagacttggccgtcatcaacaggtcagcgggggagacggtgcccgagggcttcact
tgcatcgacagcacctacagcggccagccagccaacctaaaccatggcagtctcaagagc
cccgagctgttcctgtgctacaggaggggtcgagggaagcctcctctcattgacatcggg
gttctgtatgagggtaaggagcgtctgatccagggctgcgaggtcatccaggccacgccg
tatggccgctgcgccaacgtcaacaacagctcggccacctcgcagcgcatcttcatcact
ttccgccgagcgccacccgtccagcctcagaattccctggcggtgacggacatttgcgtc
attgtcaccagcaagggcgagacgccaccacataccttttgcaaagtggacaagaatctc
aactgtggcatgtggggctccagtgtgttcctgtgttacaagaaatcagtatctgcatcc
aattccatcagttacaaagctggtcttatctttcgttatccagaagaggactatgagtct
tttcctctgtccgaatctgtccctttgttttgtttgcctatgggtgccaagatcgagtgt
tgggcaccaaacacacgcgatcctctgcctgtcttctccacgtttgtgttaaccatctcg
tctggcgaaaaggtgtatggatctgccatccagttctatgagccatattcagtggatcag
ttgagcgagaagcagaagatccagctgggcctgctcactacagtggagaagaagatgatc
cctaatcggcccgtaaacaccaataaatgcatctgtcttctctcccgctggcccttcttc
gagtccttccgcaagttcctgatgttcctctacaagctctctgtctcaggcccgcaccca
ctgcctattgaaaagcacatctcacacttcatgcacaatgtgtccttcccttcccctcag
aggcccagaatcttggtccagctctcggcacatgacaccttgatcctctcccagcctgtg
tgtacaccgttacccctcagtggggcagactacggcactctcctgatgaatctgggctca
gagaactgcgccacactattgcactttgtcctactggagagcaagatcctgctgcactca
ctccggcccgccgtgctcaccggagttgctgaggctgtggtggctatgatcttccccttc
cagtggcagtgtccctacatccccctgtgcccactctctctagcaggcgtcctcaacgct
ccgtgtccattcatagtgggtgtggactcccgctactttgacctttacgaccccccacca
gatgttgtctgcgttgatctggacaccaacactatctacctgtctgatgagaagagacac
agcaactggaagaacctcccaaaaaagccctgcaagagcctcattaactcactgagcaac
ttgcaccaccagctggccacagtctcagtgcgtcaaacggcgcaggaaaactccgcagtg
gacatgacccccatcgaggcggacttcacctggcacaagaagaagacggccctggagatg
gaaatccaggaggcctttctacgcttcatggcctccatcctgaagggctaccgctcctac
ctcaaacccatcacacaggcgccttcagaaaaggccacagctgcagactctctctacgac
ctacaaggatttctcaaaagcagagaccgtgcccaccagaagttctactcccagctcacc
aagactcagatattcatccgcttcatcgaggagtgtacctttgtcagtgacaaggacacc
ggtttggccttttttgacgattgcgtcgaaaagctttttccctctgataaaatcaccgac
aagggcacaaaggttgaaggagagtcatctgaggacacaagattgctggagctggatgag
tctcagaagagtgaacacaccgtgtttgttatgccccctgaacctccagctgatgacgga
cctgaccccgctgttcgatacacctacaaaggtttccccggactgctaatagatctgttt
gatcgtccaagagtgttacgaccagcacttagcagcagagccgcgggggctagcttgtcc
agcagccctgcgctactggcaaagaggacgaagcaggagatcaagctagcctacaagatg
gccaagcgtttctactccaaccctccgctgtgggcccgctgtctgttcagtcactgctac
agcctgtggttcatctgcctgcctgcagccgtgcgactggccaagtctaagagccgtgct
atgcagcaggcgtacaacgtcctcctgaagatgaggaccactgaggtggaggtgctggat
gaggtgtgttacagagtggtcatgcagctctgtggtgtgtggggtcttcctgttatggct
gtgagagtcctggttgagatgaagaaagctggagtacatcccaacgctatcacttatgga
tattacaacaaggctgtcttagagagcccgtggccgagccgaaaccgtagcggccagttt
atgtggaccaagcttcgcaatgtgcttcgaggagtggcccagttcaagcacgctctaaac
cgaacagcttccaagaagggacccacactcagtgccacagctgcatcaaaaggaggatca
gcagtcactgacgccgaccgtttgagtcatggaagtgccgacagctcaaatgacgttaat
ggtgaggtatttgtccacgaccacggcatggaagacgcaacagacaaccactgtagtgca
ggaaggcaatctgatcaaggctacggctccaaggatgagttacaccaggagctggcagag
ccttcacatgcagctgtcctttcagctgaagagagaaacaatgcgaaggcacagcgtaat
ggagatgacattgctggctcagtggacagcgcagtagctgtagcagaaccccccagtcct
gttgatgtcccctcccctgttcccagtattgtgaagctgtccacagggagctttgatggt
gaaacaggtacagggaagctgttcaggagacacagcaagaacgataatgtgtctctcccc
gatgatgacgccccgctggcatcaggggaggttgtcaaccagcctcaacagcagcgtcag
aaatccttcactgagcgcagctgcagcttcagcgctgaaactcgtgctggaatgctcctg
gagaaaggcgtggaccacatggccagccagatgggcgccgatgctcgtatcctgaccgca
gcgctctctcctccccccagcagcgtgtccagaacactttttaaagatctggaggaagag
cctgaagatgatcggggcttgatacttgggaaggtaccagtggaggaggagccagaagcg
ccagaaaaagggaagggagacgataaagacgcggagggggctgaggtgaaagacgaaaag
gaagagaggaagcaagatgaagcgcaggaggacgagtctggggtgcgaggagcgactctg
gagagggcagacgtggaggtgggtgctgacccactgtctcgcctggtgtcagagagcgag
gagtcggcctctgtcaccagccaggagccaccacgccccatgcctgctgtggtgtcccgc
aacctggccgaggagatcgaaatgtacatgagcctgcgaagccctctaggcatcaagtcc
tccagcatggagctccagcagtcccaaggagactccactgacgccccacagcccaaacag
actatggagcgcaggtccagccttcccgtgcctcctatcaaaactccatctggctctcca
ggtgacacagctaaacgcagccccagcactgttactcgctccaagacatttgccgcaaag
acaaagacccccgccggcaacacggctagcccaggtgttagatcgtcctcactgacagcg
ctggtcaagtcctcacagggagggtctctgggctctgtcataaacaccatttcaggcatc
aagatggacactctgttgtcaggacctaaaattgatgtgctaaaatctagcatgaagcag
gcggcaaatgtagccagcaaagtgtggggggcagtggcatcagcttactcctactcagat
gatgaggatgaacaagctcagggtggtggtggcttcccagcccgtctggatgagcatatg
ttggccgcacatgatatagatgagagtcctgaacgaggggccatcccaggtttggtggct
aacggtttgaaccagagctgcaccagcctgggcagcagcagtggcagcagcgacacaggc
cgaggaacccaccagacacatccaactccaggacgagcaggcaggggtcctgactctgag
caaggctcctcacatcacgcctcttcctctagcatctaccagaactgtgcactggaggtg
ctgatgtcaagttgctcccagtgccgctcctgtgaagctctggtgtatgatgaggagatc
atggcgggctggacagccgacgactccaacctgaacaccaactgtcctttctgtcgcacg
gccttccttcccttactgcacatcgagtttcatgacttgcgcacaatgaccgggttctat
gtgaatcccagtgcctcaggagacagtatccacagcaccagtacccagcccacagccagc
agttcagtcgacattaagacaccagacctgatcagtttccctgaagaggaacctagggag
actccagataatcatcctggggcacataaaagtctggttccagagccggtgcagtcagac
cctctgggtctactggagcatcacgcggcggggaaacagcagagatgtagtgggacatca
ctgacacgcagcaacagtgttggaggtccactgcagagcctggactactcccagagaccc
ggacatggtgtctccacaaccagcctgccctgcagcctgcaagaagtgtcggacggcatg
gggaccaaacgaccaaaccccaagcctgtgtccgtaccgtacctcagccccttggtgctg
cgcaaggagctggagaccctgttggagaatgaaggggatcaggtgatctacacccacaag
ttcctcagccagcaccccatcatcttctggaacctggtgtggtatttccgtcgcttggac
ctgcacactcacttgcctggtctcattctaacctctgaacactgcaacaatggagtacag
ctgcccctgacatcactgtcccaggacagtaagcaggtatacatccagctcctgtgggac
aacatcaacctgcatcaggaacctggtgatcccctttacctgctgtggaggactttgttg
gagaaaaaggggacgttggctccaacagaccaccaggagattcgcaccctcctcaacacg
atcgttcgcaacatccagaccaacgacgtctacggacctatcaacctgctcatacgagag
atcaaacgccgtccagagggggtcaaacgacaaaggagtatctatagagaaatactgttt
ctttcactggtagccttgggtcgggagaacatcgatgtagaggccttcgacagggagtac
cgcctggcttacgacgaactgagcgccgagcagctcaagtctttgcaccgcatcgatcga
ccaccgtcccccagcgtccagtggtgccttaaatgtttcggagcccctttcatctga
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