Lates calcarifer (barramundi perch): 108893048
Help
Entry
108893048 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit alpha-2
KO
K05637
laminin, alpha 1/2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108893048
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108893048
09142 Cell motility
04820 Cytoskeleton in muscle cells
108893048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_B
Laminin_N
Laminin_I
Laminin_II
Laminin_G_3
DUF948
Motif
Other DBs
NCBI-GeneID:
108893048
NCBI-ProteinID:
XP_050927753
LinkDB
All DBs
Position
LG7_1:complement(6492977..6673203)
Genome browser
AA seq
3256 aa
AA seq
DB search
MKRLVPVLLTALLWQWCHAQQRGLFPAVLNLASMADITANATCGSMGPEMFCKLVEHVPG
QPVRNPQCRICNQRSTKPFERHPIEYAIDGTNRWWQSPSIKNGMEYHYVTITLDLKQVFQ
IAYVIVKAANSPRPGNWILERSIDGVTFDPWQYYAITDTECLTRFNINPRTGPPSYTRDD
EVICTSFYSKIHPLENGEIHTSLINGRPSADDPSPTLLNFTSARYIRLVFQRIRTLNADL
MTLTLRDPKDIDPIVTRRYYYSIKDISVGGMCICYGHAKACPLNTVTKKFSCECEHNTCG
ESCDRCCPGYHQQPWMAGTFLTRHICEKCNCYGKAEECYFNQTVADLSLSLDIHGKYRGG
GVCTGCRDNTAGINCQTCIAGYYRPAEVSAEDDNPCIPCTCDPHGSVSQSCVADSSQATP
TQPAGSCRCKEGFGGLQCDRCAVGYMGYPFCQRCNCSVEGSTNADPCITPCMCKENVEGE
NCDRCKLGFYNLQGDNQRGCEKCSCMGVASQCSASTWTYQNETTLTGWHLVGDTGGRVWS
VHRQTPPYLSVRHSDVVNDLGSAYYWNAPGLYLGNKLSAYGGSVVYTVSYTTDQQEQMAI
RVTSEHDLIIEGGGMKIIDGRFGQPLYPSSPSTNHIVLLPENFLVSGTEQRISRRDFLSV
LANVTRVMVRASYSTEPSAVYRLHSFSMQVANPSARGERRASAVEMCSCPPGYAGTSCEA
CIPGFRRVNGNLYNGVCEACHCHGHATQCHEVTGHCLDCSHHTTGPHCDTCLHGYYGNAT
RGSPADCQPCTCPLNLPSNNFSPTCHLGEEGELLCDQCQPGYTGPRCDRCSNGYYGKPAV
PGGSCQPCDCHGNLDLSIPGSCDPSTGQCLRCRQGYGGAACDSCADGYYGDAITAKNCQP
CQCHTNGSVYEVCNKETGQCPCKENVVGRQCDECMPNCWWDAERQECMPCRCSPHGSISQ
RCDVEGRCICRPGFVGRRCDLRRQGYERRETRRPVERVPIDTVQQRWGGPSRTGGCPRGA
YRPKTGPLTHGITTGGQCVPCHCNSFGSKSFDCDETGQCRCQPGVTGPKCDRCSRGFFNF
QEGGCTPCQCSHVGNNCDANTGQCICPPNTIGERCDRCAPNHWGHDITTGCKECGCSVIG
SVTQQCNVNTGCCLCRDSFRGEKCNECQIGYRDFPQCTQCECNVSGSDSETCDMERGVCA
CADRTGKCSCKANVEGHNCDRCKPDTFGLSVRNPLGCSKCYCYGLTHSCTEAQGLIRMWL
TLKPEQTVLPLVDKANTVETRRGVSFQHPEILAHAELVTSTLSEPYYWKLPEQFRGSMIT
AYGGQLKYAVYYEARDETGPSSYEPQVIIKGGPNRSIMMTRHIPGLQIGQLTRHEIDMTE
HEWKYADGRSMTREDFMDILFYVDYILIKASHGNLMRHSRISEISLTVAEEGRPTKESEK
AHQIEKCDCPIGYSGLSCEECAAGFYRLRTGSVTSASASRVPIAAGMGSCVQCQCSGHSS
TCDPETSICQNCQDNTEGDRCERCSPGFYGVVRGSPDDCKPCACPLTNPENNFSPTCVAE
GFDDYRCTACPEGYEGKYCERCATGYHGNPRMPGGRCEECKCSPWGAWPGPCDPVTGQCR
CRVGASGRSCDLCMDRHVCGAAGIISCDDECSGLLISDMDRLYRIITDVTLTTPLPPPYK
MLYRFENMTEELKHMLSPQKAPERLLQLADSNLGSLVVEMDQLHSRATKVSADGEQVEDD
ADRIHKRAEDLEQFIRDTLLGAKDLQSKAAELNQTLSRRDGTPDKSLKEMKEEIQAMLAE
MGKRQLGGKKSIAEEEMDLAEELYQKVKRLFGDPHQATEDLKAEIKGKLSDHEGKLQEAQ
DLLHSAQGKMKQAGSLAEQNHANLTGLERKRSAVSAVKQEAQDVLGEGERLLDEANQLSD
NINKEIEDLEEMEKELGPLHVQLDDKVSRLTSGLSDSLADHVHDAEEHAKQLNESAAILD
GILAEAKNLSFNATAAFKAYTNIKANVDAAEKEAKAAKQRANEALALALGPEVPVKEAAQ
GALQKSHRLLNQAKQLQNDVKENADSVAGLKGRVKAARDKTKDLLKTVNGTMATLSAIPN
DTAAKIAATKVVATDANATAIDVLERLGDLNLRLRGLQQNYSELEDTVNAANQMIQDPEK
NIHAAGAKVKDLEDEADRLLEKLQPIKKLQDNLKRNISQIKELINQARKQANSIKVSVSS
GGDCLRSYRPDIRKGRYNTIVLHVKTTTPDNLLFYLGSAKYVDFLALEMRKGKVNFLWDV
GSGVGRVEYPHHTIHDGNWHRVEASRNGLNGTISVYPLEGSMAGMMPTPASANSPTAYTI
LDVDQNAYLFVGGILGTVKKAEAVRTTTFTGCMGETFLDGKPIGLWNYRERHGDCKGCAV
SPQRSDGEGIVQLDGEGYAAVGRPTRWNPNVSTVTFKFRTFSSDALLMYLATEDMKDFMS
LELSEGKVKVNFDLGSGVGSAISANRHNDGSWKSLTMSRNKKQATVTVVDIDSSAEEKIV
ATSQGSATGLNLKENQKIYFGGLPTIGNYRSEVTLKRYAGCLREIEVSRTPYNLLSSSDY
TGVTKGCNVENLYTVSFSKPGYMELGGLSLAVSTEISLSFSTLEDTGTILLAVSGASPHS
QQARNTNLFSSKRRRRQSGEPYLSVMLNKGSLEVLVFTGSHSPRRVIRRPEQGILNDGKE
HSLRIERLAGRSFAVQVDEEPKREATLPNDQPISLQRIFLGGIPAEVEQTSNRVNVPFQG
CIWNLMVNAILSDFSQPVSFENAEIGQCPNLAPPPPPPLLPEEGEPEKEKEESKPLRPPP
TPATVTPPPGPPAEPTPPASPATRPTAAAAPTTAEQDPNADLDSCASAVAPTALEKAYQF
GLTRNSHMSFAFDDTKVRERLILEFELRTKEESGLVLYMARINHADFVSIQIKDGQVCLG
YDLGHGNISGCVPFSINDGNWHKIRVSRVKQRGLLMVDGRYSKQMISPKKADLLDVVGMV
YVGGLPQNYTTKRIGPILYSINGCIRNLKMVGGPVSNKAAATGRSEAVIEDFKLDMATPT
SSYMVGKCFVATETGTYFDGTGFLKAVSSYRVGLDVLIELEFRTSRTNGVLLAISNQAND
GLGLELVQGKLLFHVDNGAGRITAEHMPEGEGFCDGQWHAVTANKLRHRVELVVDGKQSQ
AESPNARSNTCDTNDPIYVGGYPHGVRQAALSTSTSFRGCMRNLKITKASKTMDVQFNKA
LEIKGVQPLSCPAVAA
NT seq
9771 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgactcgtgcccgtgctgctgactgctttgctttggcagtggtgccatgcccag
cagagaggactgtttccagctgttttgaacctggcgtccatggcagatataacagctaat
gctacatgtggttcaatgggtccagagatgttttgtaagctggtggaacatgtaccaggc
cagcctgttagaaaccctcagtgtcgaatctgcaaccaaaggagcacaaaaccatttgag
cgtcatcccattgagtatgccatagatgggaccaatcgttggtggcaaagtccctccatt
aagaatggaatggagtatcactatgtgactatcacactggacttgaaacaggtgttccag
atcgcctatgtgatcgtaaaggcagccaactcacctcgcccgggtaactggatcttagag
cgttcaatagacggtgtgacctttgacccctggcagtactacgccatcacagacacagag
tgcttgacaagattcaacattaatccacggacaggacctccatcttacaccagagatgat
gaagttatctgcacatctttttattcaaagattcaccctctggagaacggagagattcac
acgtctttgatcaatggccgccccagcgcagatgacccctccccgaccctgctgaacttc
acctctgcccgctacatcaggttggtgtttcagcgaatccgaacgctgaacgccgacctc
atgactctgacactccgtgaccccaaagatatcgatcccatcgtgacaagacggtactac
tattccattaaggacatctcagttggaggaatgtgtatctgttacggccacgctaaagcc
tgcccactcaacactgttacaaagaagtttagctgtgaatgtgaacacaacacatgcggg
gagagctgtgatcgttgttgtcctggttaccaccaacagccctggatggcaggaaccttc
ctcactcgacatatctgtgaaaagtgtaactgctatggtaaggcagaggagtgttacttt
aatcagacggtagcagacttatcactcagcctggacatccatggcaaatacagaggtggt
ggggtttgtactggttgccgtgacaacacagcaggcatcaactgtcagacctgcattgct
ggttactacagacctgctgaggtgagcgctgaggacgacaacccctgcatcccctgcaca
tgtgacccacatggttctgtcagccagtcatgtgttgcagattcaagccaggctacaccc
acccagccagcagggtcatgccggtgtaaggagggttttgggggtctgcaatgtgacagg
tgtgctgtcggttatatgggctacccattttgtcagcgctgtaactgcagtgtggagggg
agcaccaacgctgacccatgtataacaccctgcatgtgcaaggaaaatgtagagggagaa
aattgtgaccgctgtaaactgggattctacaatctccaaggtgacaaccaacgtggctgt
gaaaagtgctcctgtatgggtgttgccagtcagtgctctgcttccacctggacctatcag
aatgagaccacactgacaggctggcacctggttggagatacaggagggagagtgtggtct
gtgcacagacagacacctccatatctgagtgtccgacactcagatgttgtgaatgatctt
gggtctgcctactactggaacgcacctggactatacctgggaaacaagctttcagcctat
ggagggagcgtggtctacaccgtgtcttatactacagaccaacaagagcaaatggcaatt
agagtcacctcagaacatgatttaatcatagagggcggtgggatgaagatcatagatgga
agatttggccagccgttgtacccgtcctcgccaagcaccaatcacattgttctccttcca
gaaaacttcctggtttcagggacagaacaacggattagtcggagggatttcttgtctgtg
ttagccaatgtgaccagagtgatggtccgggcctcttacagtacagaacccagcgctgtg
tacagactccactcattctcaatgcaggtagcaaatccctcagccagaggagagaggaga
gcatcagctgtagaaatgtgttcttgtccacctggatatgctggaacttcctgtgaggca
tgtattcctggttttcggagggttaacggaaatctgtacaacggagtgtgtgaagcttgt
cattgccatgggcatgcaacacaatgccatgaggttacaggacactgcctagactgctcc
caccacaccaccggcccccactgtgacacctgcctacatggctactatggtaacgccacc
cgtgggtcacctgcagactgtcagccctgcacctgcccactcaatcttcctagcaacaac
ttcagccccacctgccacctaggtgaagaaggggagttactatgcgaccagtgtcaacct
ggatacacaggaccacgatgtgacagatgttccaatggatactacggcaaacccgctgta
ccaggaggctcctgccagccctgtgattgccatggcaacctggacttatccatacctggc
agctgtgatccaagcacaggccagtgtctgcgctgtcgccaagggtatggtggggcagca
tgcgacagttgtgctgatggttactatggagatgctatcacagcaaaaaactgccaaccc
tgccagtgccatactaatggctcagtatatgaggtgtgcaataaggagactggacagtgc
ccgtgcaaagaaaatgtggttggacgacagtgtgacgagtgcatgcctaactgctggtgg
gatgctgagcgtcaggagtgtatgccctgtcgctgcagccctcatggctcaatttctcag
cgctgtgacgttgaggggcgctgcatctgtcgccctggctttgtgggccgacgctgtgac
ctgcgtcgccaaggttacgagaggcgagagacaaggaggccagtggagcgcgttcctatt
gacactgtgcagcagagatggggaggcccatcccgcacggggggttgtcccaggggggcc
tacaggcctaagacagggcctctgacccatggcatcaccacaggtggacagtgtgttcca
tgtcactgtaactcgtttggttccaagtcgtttgactgcgatgaaaccggtcagtgtcgg
tgtcagccgggcgtcactggacccaaatgtgaccgctgctcacgaggattcttcaacttc
caggagggcggttgcacaccttgtcagtgcagtcatgtgggaaataactgtgatgctaac
acaggacagtgtatctgtcctcccaacactattggtgagaggtgcgaccgctgtgctcca
aatcactggggccatgatatcacaactggatgcaaggagtgtggctgcagtgtaattggc
tcagtgacccagcagtgtaatgtgaacacgggctgctgcttatgccgggactccttcaga
ggagagaaatgcaatgaatgtcaaattggatacagagactttcctcagtgcacccagtgc
gagtgtaacgtctcaggatcggacagtgagacatgtgacatggagagaggagtgtgtgcc
tgcgctgatcgaacaggaaaatgcagctgcaaggcaaatgtggagggacacaactgtgac
cgctgtaagcctgacacgtttgggttgtcagtaagaaatccactgggctgcagcaagtgt
tactgttatggcctaacacactcctgcacagaggcgcaaggactgatcaggatgtggttg
acgctgaagccagagcagacggtgctccccttggtggataaagccaacaccgtggagacg
aggagaggcgtgagcttccagcaccctgaaatcctcgcccatgcagagctggtcacctca
actctctctgaaccctactactggaaactgccagagcagttcaggggatctatgatcaca
gcatatggtggccagttgaaatatgcagtgtactatgaggccagagatgaaactggtcct
tcgtcctacgagcctcaggtcatcattaagggtggtcccaaccgcagcatcatgatgact
cgacacataccgggactccagattggtcagctcacccgccatgagatcgacatgacagag
catgagtggaagtacgcagatggccggtccatgactcgagaggacttcatggacattttg
ttctatgtggactacatcctaattaaggcatcacacggcaacttgatgagacacagccgt
atttcagagatcagtctaacagtggctgaggaaggccgaccaaccaaagagagtgagaaa
gcccatcagatagaaaaatgtgactgtccaatcggatactctgggctgtcttgtgaggag
tgtgctgcaggtttctaccgtcttcgcacaggttccgtgacatctgcttcagcgtccaga
gtgcccattgctgcaggcatgggcagctgtgttcagtgccagtgcagtgggcactcctcc
acctgtgaccctgagacatccatatgccagaactgtcaagacaacacagagggtgatcga
tgtgaacgctgttctccaggattctatggagtggtccgaggttctcctgacgactgcaaa
ccctgtgcctgcccccttaccaacccagagaacaatttcagtcctacctgtgtagcagag
ggatttgatgactaccgttgtacggcctgtcctgagggatatgagggcaaatactgtgag
agatgtgccactggttaccatggcaaccctaggatgccaggcggccgctgcgaggagtgt
aagtgttccccatggggggcctggcccggaccatgtgaccctgtcacaggccaatgccgt
tgcagggtcggggcatcggggaggtcgtgtgacctgtgcatggacaggcatgtgtgtgga
gcagctggcatcatctcctgtgatgacgagtgctcaggtctgttgatcagtgatatggac
cgtctgtatcgcatcatcactgacgtcactctgaccacgcccctcccaccaccgtataag
atgttgtaccgttttgagaatatgacagaggaacttaagcacatgctgtcgcctcagaaa
gctccggagagattactgcaactggccgactccaacctaggatcactggttgttgagatg
gaccaactacacagcagggccactaaggtgtctgctgatggagaacaggttgaagatgat
gctgacaggattcataaacgagctgaggacctggaacagttcatcagggatacactgctg
ggagctaaagaccttcagtccaaggctgctgagttgaaccagactctctcgcggagagat
ggaactccagacaaaagcctgaaggagatgaaggaggagatccaggccatgctagccgag
atgggaaaacgacagctgggagggaagaagagcatcgctgaggaggagatggacctcgca
gaggagttatatcagaaagtcaagagattgtttggcgatccccatcaggccacagaagac
ctgaaagcagagataaaagggaagctttcagaccatgaggggaagctccaggaggcccag
gatctgctccactctgcccagggaaagatgaagcaggctggctcactggctgaacaaaac
cacgctaacctcacaggcctggagaggaagcgctctgcagtcagtgcagtaaaacaagaa
gcacaggacgtcctaggagaaggagaacgtctattggatgaagcaaaccagctttctgac
aacatcaacaaagagatagaggacttggaggagatggagaaagagcttggacctcttcat
gtccagctggatgataaagtcagtcgcctcaccagtggtttaagtgacagcctggctgat
catgtgcatgatgcagaggaacacgccaagcagctgaatgaatctgctgctattttggat
ggtattttggctgaagctaaaaatctctccttcaatgcaacagctgccttcaaggcctac
actaacattaaagcaaatgtcgatgcagcagagaaagaggcaaaggctgccaaacagagg
gcaaatgaggcactggctctggctttaggtccagaggtcccggtaaaggaggcagctcaa
ggtgcccttcagaaaagtcacagactgctgaaccaagctaaacaactgcaaaatgatgtc
aaagagaatgcagatagtgtggccgggctgaagggcagagttaaagcagcaagagacaaa
accaaagacctgctcaaaactgtcaacggaaccatggcaacgctcagtgcaatccccaat
gacacagcagctaagatagctgccacaaaggttgtagcaactgacgctaatgccacggcc
atagatgtccttgagcgccttggagatttgaatctgcgactccgtggcctacagcagaac
tacagtgagctggaggacactgtgaatgcagcaaatcagatgatccaggaccctgagaaa
aacatccatgctgcaggagctaaagtgaaggatttagaagatgaagctgataggctgttg
gagaagctgcagccaatcaaaaagctgcaggacaatttgaagcgaaacatctcacaaatc
aaggagctgatcaaccaagccaggaaacaagctaactcaatcaaagtatcggtgtcatca
ggaggtgattgtctccgtagctaccgtcctgatatcaggaaagggaggtacaacaccatc
gtccttcacgttaaaacaaccacacctgataacctgctcttctaccttggatcagccaaa
tacgttgatttcctggccttagagatgcgtaaggggaaggtgaatttcctttgggacgtg
ggttcaggtgtggggagggtcgaatatccccatcacaccatccatgatgggaactggcac
agagtagaggcatctcgtaatgggttgaatggtaccatatccgtatatcctctggaaggc
tctatggctggtatgatgccgacccctgccagtgccaactcgcccacggcctacaccatc
ttggacgtcgaccagaacgcctacctgtttgtaggaggaatactcggcactgtcaagaaa
gcagaagctgtaagaacaacaacattcacaggctgcatgggggagaccttcttggatggt
aaacccattggactatggaactatagagagagacacggagactgtaaaggttgtgctgtc
agcccccagcgctcagatggtgagggaatagtccagctggatggtgaaggctacgccgcg
gtgggacgacccacaaggtggaacccaaatgtttccactgtcacctttaagttccgcact
ttctcctctgatgctctgctcatgtatctggctactgaagatatgaaggacttcatgtcc
ctggagctttcagagggcaaggtgaaggtgaactttgaccttgggtcgggggttggcagt
gccatatcggctaaccgccacaatgatgggagctggaagtccctcaccatgtcgaggaac
aagaagcaagccaccgtgactgtagtggacatcgacagcagtgctgaggagaagatagtt
gccacatctcagggttcagctactggcttgaacctcaaggaaaaccagaaaatctatttt
ggtgggctgccgacaattggaaactacaggtcagaggtcactctgaagcgctatgcaggc
tgtcttcgggagattgaagtctccagaactccatataatctcctcagcagttcagattat
accggggtcactaaaggatgtaatgtagagaacctgtacacagtcagtttctctaagcct
ggatacatggagctgggtggactgtcgctggcggtcagcacagagatcagcctgtcgttc
agcactctggaagacactggcaccatactgttggcagtaagtggagcctcaccgcacagc
cagcaggcccggaacacaaatctcttcagctccaagaggagacgcagacagtcaggagag
ccctacctctcggtcatgctgaacaaaggctctctggaggttttggtgtttactggcagc
cacagtccgcgtcgtgtcatcagacgacctgagcaaggcattctgaatgatgggaaggag
cactcattacgcatagagaggctagctggccgatcttttgcagttcaggttgatgaggag
cccaagagggaggcaacgcttcccaatgaccagccaattagtttgcaacgtatcttcctt
ggtggtattcctgctgaagtagagcagacgtccaacagagtcaatgtaccattccaagga
tgtatttggaacctcatggtcaacgctattctctcagacttctcccagcctgtgtccttt
gagaatgctgaaatcggccagtgccccaacctcgctcccccgccacctccacctcttctg
ccggaagaaggggaacctgagaaggagaaggaggagtcaaagccacttcgtcctccacca
actccagccactgttacaccacctccagggccccctgctgagcccaccccccctgcctca
cctgctactagacctacagctgctgcagccccaaccactgctgaacaggatcccaacgct
gacttggattcatgtgcttcagctgtggccccgacagcgctcgagaaggcctatcagttt
ggactcaccagaaatagccacatgagctttgcctttgatgacaccaaagtcagagagagg
cttatactggagtttgagctgaggacgaaggaggagtcagggcttgttctctacatggca
cgaatcaaccatgctgattttgtttccatacagatcaaggatggacaggtctgtctgggt
tatgatcttggtcatgggaacatatctggctgcgttcccttctccatcaatgatgggaat
tggcacaagatccgtgtgagtcgtgtcaagcagagaggtcttcttatggtagatggacga
tacagtaaacagatgatcagtccaaagaaggctgatctgttggatgtggtgggaatggtc
tatgttggtggattaccacaaaactatactactaagaggataggaccaattctctacagt
atcaatggatgcatccgtaaccttaagatggtaggaggtcctgtgagcaataaggcagct
gctacaggtcgttctgaggcagtcattgaggactttaaactggacatggccacaccgacg
tccagttacatggtaggaaaatgctttgttgctacggagacaggcacctattttgacggc
actggcttcctgaaagcagtctcctcctacagagtgggtctagatgtgttgatagaattg
gagttcagaaccagcagaaccaatggagtgcttttggccatcagtaaccaagccaacgat
ggacttggactagagctcgtccagggcaagctgctcttccatgttgacaacggagctggg
cgaatcacagcagagcacatgcctgagggagagggcttctgtgatggccagtggcatgct
gtcactgccaacaaacttcgccacagggtggagctggtggtcgatgggaaacagagccaa
gcagagagtccaaatgcccgctctaacacctgcgacacaaatgatcccatctacgttgga
ggatatcctcatggagttcggcaggcggctctttcaaccagcacttcctttagaggttgt
atgagaaacctgaagatcaccaaggcttctaagaccatggatgtgcagttcaacaaggct
ctggagatcaaaggagtccagcctctctcctgtcctgctgtagctgcttaa
DBGET
integrated database retrieval system
