Lates calcarifer (barramundi perch): 108893058
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Entry
108893058 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: lipopolysaccharide-responsive and beige-like anchor protein
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108893058
Membrane trafficking [BR:
lcf04131
]
Endosome - Lysosome transport
Others
Others
108893058
Endosome - Golgi transport
108893058
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
108893058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Neurobeachin
Laminin_G_3
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_WDR75_1st
WDR55
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
KNTC1_N
SUKH_6
EIF3I
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
108893058
NCBI-ProteinID:
XP_050926223
UniProt:
A0AAJ8B6H7
LinkDB
All DBs
Position
LG5:complement(7283312..7460790)
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AA seq
2866 aa
AA seq
DB search
MASEETAGAAQPGDGKDGRSGAMALNPGVPIRGIRMKFAVLAGLVEVGEVSNRDIVETVF
NLLVGGQFDLEMNFIIQEPESIVCMVELLDKCEPTCQAEVWSIFTAILKKSVRNLQACTD
VELIQLVLQRISTTDSMIADLLVDMLGVLASYSITVKELKLFFSKLQGQEGQWPHHAVKL
LSVLKYMAHRNGPDSFFSFPGKNAAAIALPPIAKWPYQNGFTFHTWLRMDPLNNINVDKD
KPYLYCFRTSKGLGYSAHFVGGCLIVTSLKSKGKGFQHCVKYDFKPQKWYMVTLVHVYNR
WKNSEISCYVNGELASYGDIAWFVNTSDTFDKCFLGSSETADANRVFCGQMGAVYLFGEA
LSAAQILAIYQLGPGYQGTFKYKAESDLLFAEHHKTLLYDGKLSSSIAFTYNPRATDAQL
CLESSPKDNASIFVHSPHALMLQDVKAVVTHSIQSGIHSIGGVQVLFPLFAQLDYCQPSS
HELDTSVCCTLLSFVMELLKNSVAMQEQVLACKGFLVIGYTLEKSSKVHVTRPVLDIVLA
FSRYLSNLQNGILLLKQLCDHILFNPAIWIHAPAKVQLTLYTYLATEFISTVTIYNTIRR
VGTVLQVMHTLKYYYWVVNPQDRSGVIPKGLDGPRPNQKEILSLRAFLLLFVKQLIMKDH
GVKEDELQSILNYLLTMHEDDNLMDVLQLLVALMSEHPGPMVQAFDQRNGIRVIYKLLAS
KSEGIRVQTLKVLGYFLKHMPPKRKAEVMLSHGLFSLLTERLMLHSNQFTMTTYNVLFEI
LTEHICTQVIHKQHPDPDSTVQILNPQILKVIAALLKNSPPSPESMEVRRVFLSDMIKLF
NNSRENRRSLLQCSVWQEWMLSLCYINPRNNEEQKITEMVYAIFRILLYHAIKYEWGGWR
VWVDTLSITHSKVTFEQHKENLSRMFRQYQRQESGGSLSTIRTISGVSQSSETMECVNGP
PAEEAAPSTVIELTVDELSQKSPDSASSSTITSSPQETADERGHASITVSNILARAEEEE
RELVQEPPRDGSGDGKDSEATVTAKNQIQNCQRFQNKMVRLTKPPLETTACLENSVLGGA
SVFNEDLVDVSSVSDQIHPSDADESQEESSYASAAGEESEVLKKEEDKHDNEGNKNDQEG
QEFKTEEEKDEKQEVSTDEKARESETEEKRVSDLESPPTETPEENVTELPKEKDEQSSPI
AKTTTSDQQPSDTTLPSTAQEVAAAPDPTSPSQPSETSGTTGGETVSSAPESSTTVSSSD
PQKSAVFASKTKEIKIARLDVSNVALDTERLELKETSTTETSQGQPTAVAAGSSSGQQRE
SGTSAPRSTMFRIPEFRWSHMHQRLLTDLLFSIETDIQMWRSHSTKTVLDFVNSSENVVF
VHNSIHLISQVVDNLIMACGGILPLLSAATSSSHELENIEPSQGLAVEASVTFLQRLINL
VDVLIFASSLNFTEIEAEKNMSSGGILRQCLRLVCAMAVRNCLECQQAQCKHGAEGTLRS
YTAMPSTVLGTAKSASAQSPVDAVTGGMSPVRDLDRLLQDMDINRLRAVVFRDIEDSKQA
QFLALAVVYFISVLMVSKYRDILEPHNDKKHPQRSQSARSTDSGGISGGLEVENGVSLRR
YDSGIGEDHTSTAASEADLSSSGVTHGPDAISEALSTLSSEVRPALPADSKGKNVKDILR
SLVSAPTDDIMVDPSLLPPAFLVGDAARESSQQFRSFDRSVVVAPKKAGMMPSPGTSTPV
PAATAASVSAGTPIDNVAVVSSGDASQSTSADSAAAGGQVPASTSLPSVPPLSPVTQNTA
PNMSISERLEHALEKAAPLLRDIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVV
ELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAEDI
HKHAEFESNCAQYAAEKRDEEKMCDHLIRAAKYRDHVTATQLIQKIVNILTDKHGAWGNS
SKSRPREFWRLDYWEDDLRRRRRFIRNPFGSTHSEATLKAVAEHAADISASEEDILKGKQ
SIRGQALGNQNSEGETLLDGDDDSMSNFEEKDLENLTGPVNLSTSAQLVAPAVVVKGTLS
ITASELYFEVDEEEPGFKAIDPKILAYTEGLHGKWLFTEIRAVFSRRYLLQNTALEIFMA
NRTAVMFNFPDAATVKKVVHSLPRVGVGTNFGLPQTRRISLATPKQLFKASNMTQRWQRR
EISNFEYLIFLNTISGRTYNDLNQYPVFPWVITNYDSEELDLTLPSNFRDLSKPIGALNP
KRAAFFSDRYESWEDDQVPKFHYGTHYSTSSFTLMWLLRIEPFTTLFLNFQGGKFDHADR
TFSSVSRAWRNCQRDTSDVKELIPEFYYLPEMFVNANSYNLGVMEDGSVVSDVELPPWAK
SPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEATRALNVFYYLTYEGAVNLSSI
NDPMLREAVESQIRSFGQTPCQLLIEPHPPRSSAMQVTPLMFTEQMQQDVIMVLKFPSNS
PVTHVAANTQPGLTSPAIITVTANRLFAVNKWHGLTGHQSSTVQDQQYQLPVEIDPLIAS
NVGSHRRQISDLLDQSIKISSQCFVITADNRFILLCGFWDKSFRVYSTDSGKLTQIVFGH
RDVVTCLARSESYIGGDCYVLSGSRDATLLLWYWNGKHCSIGESPGTEFTTPRAILTGHD
CEVTCASVCAELGLVISGCKEGPCLIHSMNGDLLRTLEVPERCMHPRLIQSSTEGHCLIY
YDKGQFCLFSVNGKLLGQMEVEDSIKAMLLSRDGQYLLTGGDGGVLSVWQVHNLKQLFTY
PGCDAGIRSMAMSHDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8601 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaggagacagcgggcgctgcgcagccaggtgatggtaaggacgggagatcg
ggcgccatggcgctcaaccccggagtgcctatcaggggtataaggatgaaattcgccgtt
ctcgccggcctggtggaagttggggaagtttccaaccgagacattgtggagactgtgttc
aacctgctggtcggcggccagtttgacctggagatgaacttcatcatccaggagccagag
agcatcgtgtgcatggtggagctgttggacaagtgtgagcccacgtgtcaggccgaggtc
tggagcatcttcaccgccatcctcaagaagagtgtccgcaacctgcaggcatgcactgat
gtggagctcatccagctggtgctccagcgtatatccaccactgacagcatgatagcagac
ctacttgtggacatgctgggtgtgcttgccagctacagcatcacagtaaaagagctgaag
cttttcttcagcaaactgcaagggcaggaaggccagtggcctcatcatgcagtaaagctc
ctgtcggtgctgaagtacatggctcacagaaatggtcctgactccttcttcagctttcca
gggaaaaatgcagccgctatagctctgcctcccatagcaaaatggccataccagaatggg
tttacattccacacgtggctccgcatggatcctctcaacaacatcaatgtagacaaagac
aagccttacctatactgtttccgcaccagtaaaggcctaggttactctgcgcactttgtg
ggcggctgtttgatagtgacctcattaaaatccaaggggaaaggattccagcactgtgta
aagtatgacttcaaaccacagaagtggtacatggtgactcttgttcacgtctacaaccga
tggaaaaacagtgaaattagctgctacgtgaatggagaactggcttcctatggagacatt
gcctggtttgtcaacaccagtgacacatttgacaagtgtttcctgggatcgtccgagacg
gcagatgccaaccgtgtgttctgtggacagatgggggcagtttacctgtttggagaggct
cttagtgctgctcagatcctggctatctatcagctgggtccaggttaccagggcaccttc
aagtacaaggctgagagtgacctgctgtttgcagagcatcataagaccttactgtatgat
ggcaaactgtcctctagtattgccttcacgtataatcctcgcgccacagatgctcagctc
tgccttgagtcctccccaaaggacaacgcctccatttttgtccattcacctcatgcactc
atgctgcaggatgtgaaggctgtggtgactcactcaatccagagtggcatacattctatc
ggaggcgtgcaggtcctcttccctctgtttgcacagctggattattgccagccttctagc
catgagctggacacctctgtctgctgcactttgctatcctttgtgatggagctcttgaag
aactcagtggctatgcaagagcaggtcctggcctgcaaaggctttctcgtcattggctac
actttggaaaagtcttccaaggtgcatgtgacgcggcccgtcctggacattgtgctggcc
ttttccagataccttagcaacttgcagaatggtatcttgctgctcaagcagctgtgtgac
cacattctgttcaaccccgccatctggatccatgcccctgccaaggtgcaactgacactc
tacacttaccttgcgacagagttcatcagcacagtgaccatctacaataccattcgcagg
gtgggcactgtgcttcaggtcatgcatacactgaaatactactactgggttgtcaaccca
caggaccgcagtggggtcatccccaaaggcctagatggtccacggccaaaccagaaggag
atcctgtcattgcgagcctttctgttgttgtttgtcaaacagctcataatgaaggatcat
ggagtcaaagaagacgagctacagagtatcctcaactacctccttaccatgcatgaggat
gacaatctcatggatgtactgcagttgttggtggctctgatgtctgaacatcctgggcca
atggtccaggcctttgaccagcgcaatgggattcgtgtgatttacaagcttttggcctca
aaaagtgaaggaataagagtgcagactctgaaagtattgggctactttctgaaacacatg
ccaccaaagaggaaagctgaggtcatgctgagtcacggcctcttctccctgctcactgaa
cgcctgatgctccactccaaccagttcaccatgacaacctacaacgtgctttttgagatc
cttacagagcatatctgcactcaagtgatccataaacagcatccggaccctgactccact
gtgcagattctcaacccacagattctgaaggtaatagctgctctgctgaagaactctccc
ccgtctcccgagagcatggaggtgcgcagggtctttctgtcagacatgatcaaactcttc
aataacagccgagagaaccgcaggagcctgctgcagtgctctgtgtggcaggagtggatg
ctctctctgtgctacatcaacccacggaacaacgaggagcagaaaatcacagagatggtg
tacgctatcttccgcatcctgctctaccacgccatcaaatacgagtggggtggttggcgc
gtttgggtggacaccttgtccatcacccactccaaggtaacctttgagcagcacaaggag
aatctgtcccgcatgttccgtcagtaccagcgacaggagtctggaggctctctcagcaca
atccgaaccatctctggtgtcagccaaagctctgagaccatggaatgtgtaaatgggcca
cctgcagaggaggcggccccttctactgtcattgagcttacagtggacgagctgtcccag
aagtcccctgactcggcatctagctccaccatcacctccagcccgcaggagactgctgat
gaacggggtcacgcatctatcactgtgtcaaatatcctggcaagggccgaggaagaagag
cgagagttggtccaggagccccccagagatggctcaggtgatggaaaagactctgaagca
actgtgacagcaaaaaaccagatacagaattgccagcggtttcagaacaagatggtaagg
ctgaccaaacctccccttgagaccacagcctgtctggagaacagcgtgctgggtggagct
tctgtcttcaacgaggaccttgttgacgtgtcgtcagttagcgaccagatccaccctagt
gatgctgatgagagccaagaggagtcctcttatgcctctgctgcaggagaagaatcggaa
gtattaaaaaaggaggaagataaacatgacaatgaaggcaataaaaatgatcaggaagga
caagagtttaaaacagaagaagaaaaagatgagaaacaggaggttagcacagatgaaaaa
gctagagagagtgaaactgaagagaaacgggtatctgatttggagagtcctccaacggaa
acacctgaagaaaatgtgactgaactgcctaaagaaaaagatgaacagtcttcccccata
gctaaaaccactacttcagaccagcagccctcagatactacactaccctctacagcccag
gaggttgcagcagcaccagaccccacctcacctagccagccttcagaaaccagtggcacc
actggaggggaaactgtgtccagtgccccagaaagcagcaccaccgtatctagctctgac
ccccaaaaaagtgcagtctttgccagcaagaccaaagagattaaaattgccagactggat
gtgtccaatgtagccttagacactgagagacttgaactgaaggagacctctacaacagaa
acaagccaaggccagccgacagcagtagcagcaggaagttcttcaggtcagcagagagag
agcggcacctcggctcctcgctccaccatgtttcgcatcccagagttccgctggtcccac
atgcatcaacgcctcctcactgacctgcttttctctattgagacagacatccagatgtgg
aggagtcactccacgaagacagttctggactttgtgaacagcagtgagaacgttgtgttt
gtccacaacagcatacacctcatctcccaggtggtggacaacctcatcatggcttgtggc
ggcattttacctctgctctctgctgccacctcttcctctcatgaactggagaacattgag
ccatcccaaggcctggcagtggaggcttcagtcaccttcttacagcgactcatcaacctt
gtggatgttctcatctttgccagctccctcaacttcacagagatagaagcagagaaaaac
atgtcatcaggaggcatcctccgacagtgccttcgcctcgtgtgtgcaatggcagtgaga
aactgtctggagtgtcagcaagcccaatgtaagcacggtgcagagggcacactccgtagc
tacacagccatgcctagcactgtgcttggaacagccaagtctgcatctgcacagagtcct
gttgatgcagtgacaggcgggatgtctccagtcagagacctggaccggctgcttcaggac
atggacattaaccgcctcagggctgtcgtcttcagagatattgaggacagtaagcaggcc
cagtttttggctctcgctgtggtgtacttcatctcggtcctcatggtgtccaagtaccgt
gacatactggagccccacaatgacaagaaacaccctcaacgatcccagtctgccaggagc
acagatagtggtggcatttctggtggactggaagtggagaacggcgtctcgctccggcgg
tatgactccggcattggtgaggaccacacctcaactgctgcgagcgaggcagacctgtca
tcctctggtgtgacacacggtccagacgccatctcagaggccttgtccacgctgtcatct
gaggtcagacctgctctgcccgctgattcaaagggcaagaatgtgaaggacattctgcgc
agcctagtgagcgctccaactgatgatatcatggtggacccaagtctgctgccaccagcg
tttcttgtgggtgatgcagccagagaatcatcgcaacagttccgctcatttgatagaagt
gttgtcgttgcacccaagaaagccggcatgatgccgtctccaggcacctccactcccgtc
ccagcagccactgctgcctctgtgtctgctgggacacctatcgacaacgttgccgtggta
tcttctggcgatgcctcccagagcacctctgcagattctgcagctgcaggcggccaggtt
ccagccagcactagcctgccatctgtcccccctctctcccctgtgacccagaacacagcc
cccaatatgagcatctcagagcgtctggagcatgcactggagaaggcggctcctctgctg
agagacatctttgtggactttgctccttttctctctcggaccctgctgggcagccacgga
caagagctccttattgagggcacaagcctggtgtgtatgaagtccagcagctcagtagtg
gagctcgtcatgcttctgtgttcacaggaatggcagaactccatccagaagaatgcaggt
cttgccttcatcgagttggtcaatgaaggcagactgctgagtcacaccatgaaggaccac
ctggttcgcgtggctaatgaagctgaatttattctcagccgacagagggctgaagacatc
cataaacatgcagagttcgagtctaactgcgctcagtacgctgcagagaagagagatgag
gagaagatgtgcgaccaccttatccgagcagccaagtaccgcgaccacgtgacagccaca
cagctcatccagaagatagtcaacatcctgactgacaaacatggagcctggggaaactct
tccaaaagccggccgagggagttctggcgcctggactactgggaggacgatttaaggcgg
cgacgtcgcttcatcaggaacccctttggatccactcattcagaggctacgctcaaagcc
gtggccgaacacgcagctgatatcagtgcatccgaggaggatattctcaaaggcaaacag
tccatcaggggtcaggctctgggaaatcaaaactcggagggtgagactttactcgacggg
gacgatgacagtatgtccaactttgaggagaaggacctggagaacttaacaggcccagta
aacttgagcaccagtgctcagctggtggctccggccgtggtggtgaaaggcaccctgtcc
atcaccgcctccgagctatacttcgaggtggatgaagaggagccgggcttcaaggccatc
gatccaaagattctagcctatacggaaggtcttcatggaaaatggctgttcacagagatc
cgcgccgtcttttccagacgctacctactgcaaaacactgctctggaaatcttcatggcc
aacagaactgcagtcatgttcaacttcccagatgctgccactgtaaagaaagtggtccac
agtcttcctcgtgttggggtgggcacgaactttggcctcccacagaccaggcgaatctcc
ctggccacaccaaagcagctattcaaagcatccaacatgactcagcgctggcaacgtcgg
gaaatctccaattttgagtacctaatctttctcaacaccatctctggtcggacttataat
gacctaaaccagtatccggtctttccatgggttatcaccaactacgactcagaggaactt
gacctcactctgcccagcaacttcagagatctgtcaaagcccatcggtgctctgaatccc
aagagggcggcatttttttcagaccgatatgagtcctgggaggatgatcaggtgccaaag
ttccactatggcacccactattccacctccagcttcaccctgatgtggctactacgtatt
gaacccttcaccacattgttcctcaacttccaaggaggaaagtttgaccacgctgaccgc
accttctcatcagtgtcccgggcctggaggaactgccagagagacacatctgatgtcaag
gagctgatcccagagttctactacctccccgagatgtttgtcaatgccaacagttacaac
ctgggagtgatggaggacggcagcgtggtgtctgatgtggagctgccaccttgggccaag
agcccagaggagtttgttcgaatcaatcgcctggctctggagagtgagtttgtgtcctgc
cagctccaccagtggatcgatctgatcttcggctacaagcagcagggacctgaagccacc
agagctctaaacgttttctattatctgacctatgaaggtgcagtcaacctgagctccatc
aacgacccaatgctcagagaggctgtggagtctcaaattaggagttttggacagaccccc
tgccagttgctcattgagccacacccacccagaagctcagccatgcaagtgactccgctg
atgttcacagagcagatgcagcaggatgttatcatggtgttgaagttcccatcaaactct
cccgtaacccacgtagcagccaacacccagccaggtctgacgtcacctgccatcatcact
gtcaccgccaaccgcctgtttgctgttaacaaatggcacggcttgacaggtcatcagagc
tcaacggtgcaggaccagcagtaccaacttcctgtggaaattgacccgctgatagctagt
aacgtgggcagtcatcggcgtcagatctcagacctgctggaccagagcattaagatcagc
tcacagtgtttcgtcatcacagcagacaaccgcttcatccttctgtgtggcttctgggac
aagagcttccgggtttattccactgactcaggaaaattgactcagatagtgtttgggcat
cgtgacgtggtgacttgtctggctcgctctgagtcatacattggaggagactgctacgtc
ctgtcaggttccagagatgccaccctgctgctgtggtactggaacggaaagcactgcagt
attggagagagcccaggcacagagtttaccacgccacgggccatcctaacaggccatgac
tgtgaggtgacatgtgcgagtgtgtgtgctgagctgggtcttgtcatcagcggctgcaaa
gagggtccttgtctgatccattccatgaatggggacctgctgcggaccctggaggtacca
gagcgctgcatgcatccccgcctcatccagtcctctacagagggacactgcctgatctat
tacgacaagggacagttttgtctcttcagtgtcaacggcaagctactaggacaaatggag
gtagaagacagcatcaaggccatgcttctcagtcgtgatggccagtatctgctgacaggt
ggagatggaggcgtattatctgtctggcaggtccacaacctcaagcagctgttcacctac
ccaggctgtgatgcaggaatccgttccatggccatgtcacacgaccaaaggtgcatcata
actggcatggcatctggaagcatcgtgctcttctacaacgacttcaacaggtggcaccat
gagtaccaaaccagatactga
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integrated database retrieval system
