Lates calcarifer (barramundi perch): 108893140
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Entry
108893140 CDS
T04895
Symbol
chrne
Name
(RefSeq) acetylcholine receptor subunit epsilon
KO
K04817
nicotinic acetylcholine receptor epsilon
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108893140 (chrne)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108893140 (chrne)
Ion channels [BR:
lcf04040
]
Ligand-gated channels
Acetylcholine (nicotinic)
108893140 (chrne)
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GFIT
Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
Motif
Other DBs
NCBI-GeneID:
108893140
NCBI-ProteinID:
XP_018546499
UniProt:
A0A4W6BIQ7
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Position
LG20:12153135..12161272
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AA seq
518 aa
AA seq
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MMAARSFWIFSGVVTILGGLMVQVQCNEELRLISDLFKDYNKNIRPVFHPEDKVEVQIKL
TLTNLISLNEKEETLTTNVWIEIQWTDHRFTWNTSDYHGLDVIRVPCNTVWLPDIVLENN
IDGKFDVAYYANVLISNTGWMYWLPPAIYRSTCAIEITYFPFDYQNCTLAFRSQTYSANE
VVLILAVGETGETIEWVDIDPEAFTENGEWAIVHRPARKMINKRYTPDDLEYQEITFNLI
IQRKPLFYIINIILPCSLISSLVVLAYFLPAQAGGQKLTVAISVLLAQTVFLFLIAQKVP
ETSLSVPLIGKYLIFVMCVTTLIATNQIVVLNFSLRSPSTHTMSHTIKHIFLEMVPRFLG
MSPLVDDSEETTEVNGVRERRRSSFGLMQRAEEYVLKQPRSEMMFDKQRERHGLTRSIVD
NIDVSSTANLYKSLAQAAPEIKQCVDACNFIAESTRQQNNIGSEIESWVLIGKMIDKVCF
WAAILLFIIGTVGIFLTGHFNQAPEFPFPGQSKKYAPS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagcacgcagtttttggatattttctggagttgtgactattctcgggggtttg
atggttcaggtgcagtgtaatgaggagttacggctgatcagcgatctgttcaaagactac
aacaagaatattcgcccggtgtttcatcctgaagacaaggtggaggttcagataaaactg
accctcactaaccttatctctctgaatgaaaaggaagagactctgacaaccaacgtgtgg
attgagattcaatggactgatcatcgctttacttggaacacatctgactatcatggccta
gatgttattcgtgtcccatgcaacactgtttggcttcctgacattgtccttgagaacaac
attgatggcaaatttgatgtggcctactatgccaatgtattgatcagcaacactggttgg
atgtactggctacctcctgctatctatcgtagcacttgtgccattgagatcacctacttc
ccatttgattatcaaaactgcacgttagcattcaggtcccagacgtacagtgccaatgaa
gtggtcctcatcttggctgttggagaaacaggcgagactattgagtgggtggacatcgac
cccgaggctttcacagagaatggtgagtgggccatcgtccatcgtccggcccgtaagatg
atcaacaagcggtataccccagatgacctggagtatcaggagatcacattcaatctgatc
atccaacggaagcccctgttctacatcattaatatcatcctgccatgctccctcatctcc
tcactggtcgtattggcctacttcttacctgcacaagctggagggcagaagctgactgtt
gccatctctgtcttgctggctcagactgtcttcctctttcttattgctcagaaggtccct
gagacatctctctctgtccctctcattggcaagtacctgatctttgtcatgtgtgtcact
actctcattgccactaatcaaattgtggtgctgaacttctccctgcgcagccccagcact
cataccatgtcccataccatcaaacatattttcctggagatggtgcctcgcttcctgggc
atgtccccactggtggatgacagcgaggagacaacagaggtaaacggagtgagggagcgg
cggcgcagctccttcggcctcatgcagagagcagaggaatatgtcctgaaacagcctcgc
agtgaaatgatgtttgacaaacaaagagagaggcacggtctcacacggtcgattgtggat
aacatagatgtcagcagcacagccaacctgtataagagtttggcccaagctgcacctgag
atcaaacagtgtgtggatgcctgcaatttcattgctgagagcacaagacaacaaaataac
attggatctgaaattgaaagctgggtactgattgggaagatgattgacaaggtgtgtttc
tgggctgccattcttcttttcatcatcggcacagtggggatcttcctaacaggacacttc
aaccaggcaccagaatttccatttcctggccagagcaaaaaatatgcaccaagttaa
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