Lates calcarifer (barramundi perch): 108893141
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Entry
108893141 CDS
T04895
Name
(RefSeq) short transient receptor potential channel 2
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108893141
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108893141
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
PKD_channel
Ank_2
Motif
Other DBs
NCBI-GeneID:
108893141
NCBI-ProteinID:
XP_018546501
UniProt:
A0AAJ7VCC0
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Position
LG20:11990673..11996539
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AA seq
1054 aa
AA seq
DB search
MGEWTSNTAAVLLSCPSPPQPEQWREIMNKKMQFPPELISAIQEGKIELLCGLLKTGDGI
IRQLDESEDRQWREALNLSIRLGSEDAMDALLQGVKFDFRQIHEALLVAVDTNQPRVVKR
LLDRLDQEKGNKMDVRSFSQAIFDHSIDNSQFAPGVTPLTLACQKDLYEIVTMLSQKGHG
IPWPHKISCACLECRNGRQYDLLKFSLSRINTYRGIASRAYLSVTSDDAMLSAFSLSREL
RKLSQKEPEFKPQYLSLEKLCQEFAVELLGMCRNQSEVTTILNSCGDESQDELDEQAFEE
GIPNLSRLRLAVNYNQKQFVAHPICQQVLSSIWCGHLAGWRGSRTAWKLFVSVGIFLTMP
ILCLVYWIAPKSKVGKILKIPVIKFLLHSASYLWFLITLLGESITMELYRDKFASRQQNI
LHSSFHMVWVVGFFWYECKEVWIEGLRSYFLDWWNCLDMMVLSMYLASFALRVLIMLKGY
FLCHDHNLAEECIYFTQTVRDDWHQEDPQLIAEVLFAVTSMLSFTRLAYILPAHESLGTL
QISIGKMIDDMMRFMFILMIIGTAFLCGINNVYVPYVISPHLGRFNETFHFLFWTMFGVA
NQDYVDMPRFMLAEFVGRILYGIFTLVIVIVLLNMLIAMITNSFQKIEDDADVEWKFARS
KLYLSYFREGLTMPVPFNIIPSPKAIFYIIRGIFRRICCCCTCSSEQKYPPIASMSNEKG
SEESQLPYRQQVIRALVQRYIESARREFEETKRKDIGNRITELSKAVFRIHNDMKVMHQL
LLDDGHMVTTNDALTRDGSSILGKYIIGAKNNFRGFNSRQEDKNTSLKVTVHNEEEEVDK
GKADSDTKQESDTPENQVGECGAEETKRATDCDVVKMEEGRAQVMPGDEKETEKKEQVEA
DKNENTVSKVREEEAAGMSLDNVEEKVKAEAVQDEAEKIRDEEISTGKKEGEKHTETTTE
QAESANVSSEKTNTKKLVNRFKDIELQEKKVEPRWMKGRKFEHNTAERSGVREGNEKPGA
KKTIPSPTGSSSSQDTGFGSQEGEGSIDGSIVSP
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaatggacttctaatactgctgctgtactcctgtcctgtccctcccctccacag
ccagagcaatggcgcgagatcatgaacaagaagatgcagttccctccggagctcatcagt
gccattcaggaagggaaaatagagctgctgtgtggactgttgaagaccggggatggtatc
atccgtcagctggatgaatctgaggaccgccagtggagagaggccctcaacctgtccatc
cgcctgggcagtgaggatgccatggacgccctcctccagggggtcaagtttgacttccgt
cagattcacgaagccctgctggtcgccgtggacaccaaccagcccagagtggtgaagcgt
ctgctggaccgcctggaccaagagaaaggcaacaagatggacgtacgctctttctctcag
gccatttttgaccactctatcgacaactcccagtttgcccccggcgtgacccctctgacc
ttagcctgccagaaagacctgtatgaaatagtcaccatgctcagccaaaaaggtcatggc
atcccatggccacataagatatcctgtgcctgtctggagtgtcgtaatgggaggcagtat
gacctgctgaagttctccttgtctcgtatcaacacctaccgcggcattgccagccgcgcc
tacctgtccgtcacctctgatgatgccatgctcagcgctttcagtctcagcagagagctc
cgcaagctctcacaaaaagagccagagttcaagcctcagtacctaagcctggagaagctt
tgtcaggagtttgccgtcgagttgctgggcatgtgtcgcaaccagagcgaggtgaccacg
atccttaacagctgcggggacgagagccaggatgagttggatgagcaggccttcgaggag
ggaatacccaacctgtcacgtctgcggcttgctgtcaactacaaccagaagcagtttgtg
gcgcacccaatctgccagcaggtactctcatccatctggtgtgggcacctggcagggtgg
agaggcagcaggacggcctggaagctatttgtttccgtggggatcttcctcaccatgccc
atcctctgcctcgtctactggatcgcaccaaagtcaaaggtaggaaagatcctaaagatt
cctgtgatcaagtttctccttcactcagcctcctatctgtggtttctcatcacattactt
ggagagtcaataacgatggagctgtatcgagacaaatttgcttcccggcagcagaatatc
ctgcacagctccttccacatggtgtgggtggtcggattcttttggtatgagtgtaaggaa
gtgtggatcgaggggctgcggagttacttcctggactggtggaactgcttggacatgatg
gtgctcagcatgtacctggcgtcctttgcattacgtgtgcttatcatgctcaaaggttac
ttcctctgccacgaccataacctcgcagaggagtgtatttatttcacccagactgtgcgt
gacgactggcaccaggaggacccccagctgattgcggaggtgctgtttgcagtgaccagc
atgttgagcttcacacggctggcatacatcctgccagcccatgagtctctgggaactctg
cagatctccataggaaagatgattgacgatatgatgagattcatgtttatattgatgatc
attggaacagccttcctctgtggtatcaacaatgtctatgttccttatgtcatctctcca
catcttggcaggtttaacgaaaccttccacttcttattctggaccatgttcggtgtggcc
aaccaggactatgtggacatgccacggtttatgttagcagagtttgtgggaaggatcctg
tacggcatcttcacactcgtcattgtcatcgtcctgctcaacatgcttattgctatgatc
accaactcctttcagaaaattgaggatgatgcagatgttgagtggaaatttgctcggtca
aagctgtacctgagttacttcagagaaggcctcaccatgcctgtgcccttcaacatcatc
ccctctcccaaagccatcttttacatcataagaggtatcttcagacgaatctgctgctgc
tgtacgtgtagctctgagcaaaaatatccccctatagcttctatgtccaatgaaaaggga
tcagaagaaagccagttaccttaccggcagcaagtgatcagggctctggtgcagcgctac
atcgagtcagctcgcagggagtttgaggagaccaagaggaaagatatcggtaatcgcatc
actgaactgagcaaagcggtcttcaggatacacaatgatatgaaagtgatgcatcagctc
ctgttggatgatggacacatggtgacgacaaatgatgctttgaccagggatggctcctcc
atactggggaaatacatcataggtgccaagaacaatttcagaggttttaatagcagacaa
gaggacaaaaacacatcgcttaaagttacagtgcacaatgaagaggaagaggtggataaa
ggaaaggctgactcagatacaaagcaggaatcagacacaccagagaatcaggtgggtgaa
tgtggagcagaggaaacaaagagggcaacagactgtgatgtggtgaagatggaagaaggc
agagctcaagtgatgccaggagatgagaaggaaactgagaaaaaagaacaggtggaagca
gacaaaaatgaaaatactgtcagtaaagtgagagaggaggaggcagcaggaatgagttta
gataatgttgaagaaaaggtgaaagctgaggccgtgcaggacgaggcagaaaaaataagg
gacgaggagattagcacagggaagaaggagggtgaaaaacacaccgagacaaccactgaa
caagctgagagcgccaacgtcagcagtgagaagacaaacaccaaaaaattagtaaacagg
ttcaaagacatagagctgcaagaaaaaaaagtggagccgagatggatgaagggtagaaag
ttcgagcataatacagcagagaggtctggtgtcagggagggcaacgagaagcctggagcc
aagaaaaccatcccctctccaacgggcagcagcagctcccaggacacaggctttggctca
caagaaggggagggatcgatcgatgggtcgatagtgagtccgtaa
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