Lates calcarifer (barramundi perch): 108893218
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Entry
108893218 CDS
T04895
Name
(RefSeq) nuclear receptor corepressor 1 isoform X1
KO
K04650
nuclear receptor co-repressor 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108893218
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108893218
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108893218
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108893218
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
108893218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GPS2_interact
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
108893218
NCBI-ProteinID:
XP_018546600
UniProt:
A0AAJ7VCH9
LinkDB
All DBs
Position
LG20:8768433..8818266
Genome browser
AA seq
2398 aa
AA seq
DB search
MSSSSGYPPSQGSFSSEQSRYPPHSVQYTFSGTRHQQDFTVPDYRTHMQDPQGRRRPSLL
SEFHPGAERPPERRHGYEQQYHSVTAQPEHEALEAKRPRMETVAEAHITRTPPTAGGMVL
PMPHTVQDSLRATVEVKKESQFTVKVESPSTGGPTLHMGEEQDTSPSKLSKEELIQSMDR
VDREIAKVEQQIFKLKKKQQQLEEEAAKPVEPEKPVTPPPVEHKHRSIVQIIYDENRKKA
EEAHKILEGLGPKVELPLYNQPSDTKVYHDNIKTNQVMRKKLILFFKRRNHARKQREQKI
CQRYDQLMEAWEKKVERMENNPRRKAKESRTREYYERQFPEIRKQREQQERFQRVGQRGT
GLSATIARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMYDSEQRRVKFINMNGLMDDP
MKVYKARQFMNVWTEHEKEIFKEKFVQHPKNFGLIASYLERKCVADCVLYYYLTKKNHNY
KTLVRRNYGRRRGRNQQITRPSQEDKSDDKNEEDKSEKSEKKEDEEKKDEEEKDEKEDSR
DIGKDKDKCDGGEDEDGKEQNTPRGRKTANSQGRRKGRITTRSMANEAASVAAEEAPPPA
SEPALPDPPQLAKPDSAQKALKEPAKTPVASMDANKAGAGETGETSRWTEEEMEVAKKGL
VEHGRNWTAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQDTRRARADRSQGEGLA
TASPDDDEDNADDSEGGDNSSDTESASSPSQADSSKSGDSKRADSTAGDAQCSDQDKGQA
SNGKAPEPSYGELCVKEEKSPESETGSQEEKARVASYPGSVHPKTEPQDVDMKTGEVQVK
MEPEIKEKGEKGDHSEMQRDLHSDNDSSATCSADEDVEAEPERQRIFSMEKPSLLSPPGS
VLVSSPKQAQLNIQQLQQRAAAIPPMVSGPFGPGGVPISGFAMLQHQIKAVHESAHQEEK
QRQDQGDLERRPPFNTRSPTVLDRDGKLLPYMPYDMKLALDQEAHSGRPGSPYRLSPREL
SKASPQPDPNAPSASRYSVPPVLHPAPNQLVQSMPDGVRVTFSRPSRPPNIPSPPPLIPT
TKPTDKPSFIQGGSISQGTPGTYLPPHAVYGPEGTKSTVGSISLGLPRQQDPSKPGAGVP
SIQDGRGNPAKVGLTFRGSITQGTPALPQSSIAADLLKGTITKLATEDLSIPDKARGEQL
AKGHVIYEGKSGHILSFDAIKNPRENTRSPRTNHEMKRTYDMMEGPMARGHPGREGAPYE
GLISRALPRESLHGDSKERPIITGSIMQGTPRTAAESYEDAMKYGKQIKRESPPIRSFEG
GIGKGKPYEGVNTIKEMGRSIHEIPRQDQSGQEICKTPDMSDRRVMEGPMSQIHSLNQPT
IKHNVKSLITSPSKHPHSMPQLEAMERAKYEEGKAVRHTVVNSTTSVLRSTHQEAGKSQL
SPGMYEDANARRTPVNYSTNPVSRGSPMLGRAPDGVMSSAKSATHERKSAMTPTQRDSVP
AKSPVSGGDPVASHSPFDPHHRAVVPGEVYRGHLPPHLDPMAFHRVLDPAFMFSRQPSPT
NYHNTYQLYTMENTRQTILNDYITSQQMQVIPRPDMARGLSPREQPVAIPYAAGARGIID
LAQMPPTILLPHPGGTGTPTLERIAYLPGAQPPFPPRAFNPTSISPGHPAHLAAAAASAE
RERERERDREQQEKEREKEREREQREREREREREREREMRERERDRERTNEYIRGGGPEQ
PGRPGSRGYLHSPSPSLRTQDVVVQQRPSIFQGKSVITSLMPHSAAVTTVAQSSSRHSTA
ADALAALVDAAVSAPPVDVAKVKESKHERDDDMSASAAARRAASLSEQQQQEAERRSMQS
PYGAMSLPGGKPHPAYSEGPGVGVKDKGPQTSKSRIEEELRTRGKTTITAASFIDVIITR
QIASDKDSRERGSQSSDSSSSLSSNRYDSTGGGAIEVISPASSPVQLQQDKPEDGQQQAT
AGMRAYDMSRYRPSVDPPQPPSSQADSYSQVPKTHRVMTLADHISHIITQDFARNQDPTP
VSSSASATFQSMVPTVSSSSRAKVPSRYSPESQVQALHHQRPSSRVSPENAPDKSRARPG
KSPDRGGRQMENYEPISPPQSYQGMDKQEAGGPPPQRREADNSEIRSDSRSPGNVSYLPA
FFTKLENTSPMVKSKKQEIFRKLNSTSGVGDSDAGNAQPGTEIFNLPAVTSSSSINPRNH
SFNDPASNLGLEDIIRKALMGNLEERQEEHQGGVGAINNTPGAGGDGRQEANPSPSMGKQ
KQGKANSRKSKSPNLGQAYAGGERPSSVSSVHSEGDYHRQAQAQPTWSWDDRPSSTGSMQ
FPYNPLIMLNNTPPTSIASPSIQSQQQQPPPSGAPVAQQRVWQSLLSEQYETLSDSDD
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtagctcaggctacccccccagccaggggagcttcagcagcgagcagagccga
tacccaccacattctgtccagtacaccttctccggcacacgccaccaacaggatttcacc
gtcccagactatcggactcacatgcaggatccacagggtcggagaagaccatctttactg
tctgaattccaccctggagcagaaaggcctccagagagacgccatggttacgaacagcag
tatcactccgtcacagcccagcccgagcacgaggccttagaggctaagcgccctcgcatg
gagactgttgcagaggcccacatcacccgcacacctcccactgctgggggtatggtctta
cctatgccccatacagtacaggacagcctaagagccactgtggaggtcaaaaaggagtct
cagttcactgtcaaagtggagtccccgtccacagggggacctacactacatatgggggaa
gagcaggacacttcaccttccaaactatctaaagaggagctgatccagagtatggaccgt
gtagacagagagattgctaaagtggagcagcagattttcaagctgaagaaaaaacagcaa
caactggaggaggaagcagcaaagccagtggagccagaaaagccagtgacccctccccca
gtggagcacaagcaccgcagcattgtccagataatctacgatgagaacaggaaaaaagct
gaagaggcccataaaatactggaaggtcttggtcctaaggttgagctgcccctgtacaac
cagccatcggacacgaaggtgtaccatgacaacatcaagaccaaccaagtcatgaggaag
aagctgattttgttttttaagaggaggaatcatgctcgtaaacaaagggaacagaagatc
tgccagcgctacgaccagctgatggaggcatgggagaagaaagtagagcgaatggagaac
aaccccagacgcaaagccaaggagagcagaacacgagagtactatgaaaggcaattccca
gagatccgcaagcagagagagcagcaggaacgcttccagagggttggacaaagaggaaca
ggcctttctgcaacaattgcaagaagcgagcatgagatttctgaaatcatagatggcctt
tctgagcaggagaacaatgagaaacagatgagacagctgtcagtcatccctcccatgatg
tatgactctgagcagagacgagtgaagttcatcaacatgaacggcctgatggatgaccca
atgaaggtgtacaaagcccggcagttcatgaatgtttggaccgaacacgaaaaggagatc
tttaaggagaagtttgtccaacaccccaagaattttggtctgattgcctcctatctagag
agaaagtgtgttgccgactgtgtcctgtactactacttaaccaagaagaaccacaactac
aagacactggtgaggcgaaattatggaagacggagaggaaggaaccagcaaataacacgt
ccctcacaagaagacaagtcagacgacaaaaacgaagaggacaaatctgagaagtccgag
aaaaaagaggacgaggaaaagaaggacgaggaagagaaagatgaaaaggaggattctagg
gacattggcaaggacaaagacaagtgtgacggtggggaggacgaggacggaaaggagcaa
aacacgccgcgtggcaggaagactgccaacagccagggccgccgtaagggaaggatcacc
acacgctccatggccaatgaggctgcatctgtggcggctgaggaagcacctccccctgcc
tctgagcctgccttgccagatcctccacagctcgctaaacctgattcagcacagaaggcc
ttgaaggagcctgcaaaaactccagtggcttccatggatgctaataaagctggagctggt
gaaaccggagaaacttctcgctggaccgaggaggagatggaggttgccaaaaaaggactt
gttgagcatgggcgaaactggacagccattgccaaaatggtgggcaccaaaagtgaggca
cagtgcaagaacttctatttcaattacaagagacgtcacaacctggacaacctgctccag
cagcataagcaggatacacggcgggctcgtgctgataggtctcaaggtgaaggtctagcc
acagcatctcctgatgatgatgaggacaacgctgatgacagtgaaggtggtgacaacagc
tctgatacagagagtgcctcctccccctctcaggctgactcctcaaagtctggtgactcc
aagagggcagacagcactgcaggagacgcccagtgctctgaccaggacaaaggtcaagcc
agcaatggaaaggccccagagccctcatacggggaactctgtgtcaaggaagagaaaagc
ccagagagcgagactggatcccaggaggaaaaggccagagtagcctcctatccaggctca
gtacatcccaaaactgaacctcaggatgtggacatgaagactggagaggttcaggttaag
atggagcctgagatcaaggagaaaggagaaaagggagatcacagcgaaatgcagagggat
cttcattcagataatgactccagtgccacctgcagtgctgacgaggatgtggaggcagag
cctgaaagacagagaatattctccatggagaagccttcattgctcagtcctccaggctca
gtgctggtgtcctcaccgaagcaagcccagctcaacatccagcagctgcaacagagggca
gcagccatcccacccatggtgtctggtccttttggccctggtggtgtgcccatcagcggt
tttgccatgttgcagcaccagatcaaagcagtgcatgagtctgcacaccaggaggagaag
cagaggcaggatcagggagatctggagcgcagaccccctttcaacacccgcagtcccacc
gtactcgacagagatggtaagctcttaccctacatgccttatgacatgaagctggctctg
gaccaggaagcccactctggtcggccaggctctccctacagactatctcccagggagctg
agcaaggcctcaccccagcctgaccccaacgcccccagtgcctcacgctacagtgtgcca
ccagtcctccaccctgcccccaaccagctggtccagagtatgccagatggagtccgtgtg
acgttcagcagacccagtcgacctcccaacattccctctcctcctccactcattccaacc
accaagcccacggacaagccctccttcattcaaggaggctccatctcccagggaactcct
ggcacatacctcccgccccatgctgtctatgggccagaggggactaagagcactgtgggc
tccatctctctgggtttgcctcggcagcaggatcccagcaagcctggagctggagttcca
tccatacaggatggcagaggcaacccagcaaaggtgggtctgacttttagaggatcaatc
actcagggcacaccagccctgccccagtccagcattgctgctgacctcctgaagggcaca
atcacaaagctggccacagaggacctgagcatcccagacaaggccaggggagaacagctg
gctaaaggtcacgtcatctatgaaggcaagagtggtcatatcctctcctttgatgctatc
aagaatcccagggaaaacacccgcagccccagaacaaaccatgagatgaaacgcacttat
gacatgatggagggacccatggccaggggacaccctggcagggaaggcgctccatatgag
gggttaatcagcagagccttgcctagagaaagtctgcatggagattctaaggaaagacca
ataatcactggatccatcatgcaaggaacacctagaactgctgcagagagctatgaagat
gccatgaaatatggaaaacagataaagcgagagagtccaccgatccgttcctttgaaggt
ggcattggaaaaggcaagccctatgagggagtaaatactattaaagagatgggacgctcc
attcacgaaatcccccggcaagaccagtctggccaggaaatctgcaagacccctgacatg
tcagacaggagggttatggagggcccaatgtctcagattcactctctcaaccagccgact
atcaagcacaacgtcaaatctctaatcaccagtccctctaagcatccccacagcatgccc
cagctcgaggccatggaacgagccaaatatgaggagggcaaggcagtacgtcacaccgtg
gttaactccaccacctctgtcctgcgctccacgcaccaggaggctggcaaatcccagctt
agcccgggcatgtatgaggacgccaatgctcgcaggacccctgtcaactacagcaccaat
cctgtatccagaggatcacccatgcttggacgtgctccagacggtgttatgagctctgca
aagtctgctacacatgaaagaaagagtgccatgaccccaacacagagggacagtgttcca
gccaagtcccctgtgtcaggtggtgaccctgtagcctctcacagccccttcgacccccac
caccgggccgttgttcctggggaagtgtaccggggccacttgcctccacatctcgacccc
atggccttccacagagtgctggatcctgcgttcatgttctccaggcagccgtccccgaca
aactaccacaacacctaccagctgtacaccatggagaacacgcggcagaccatcctcaac
gattatatcacttcccagcagatgcaagtcattcctcggcctgacatggcccgtggcttg
tcaccacgggaacagcctgtcgctataccttacgcagctggagcacgagggattattgat
ctagcccagatgcctccaactatcctgttgcctcaccctgggggaacaggtactcccact
ttggaacgcatcgcctacctccctggagctcagccccctttccctcctagggctttcaac
ccaacctccatttcgccaggtcacccagcccaccttgctgctgctgctgccagtgcagag
agggaacgggagagggagcgtgaccgggagcagcaggagaaagagagggaaaaggagagg
gaaagggagcagcgggaaagggagagggaacgggaacgtgagcgggagcgagaaatgcga
gaacgggagcgggaccgggagcgaaccaatgaatacatccgtggaggtggaccagagcag
ccagggcgaccagggagtcgaggttatctgcattccccttctccctcgctcaggacacag
gacgtagtggttcagcagcgaccaagtattttccagggcaagagtgtcatcacctctcta
atgccccattcagcagcagtgacaacagtggcacaaagtagctctcgccacagtactgct
gctgatgctctggctgcgctggtggatgctgcagtctctgccccaccggtggacgtggcc
aaggttaaagagagcaaacatgaacgggatgatgacatgtctgcatcagctgcagctcgg
cgagcagccagcctctccgaacagcagcaacaggaggcagaaagacgatccatgcagtca
ccatatggtgcaatgtctctgccaggaggtaagccccatccagcttactctgagggccct
ggcgtcggggttaaggataagggacctcaaacctcaaagtcccgcatcgaagaggagctt
cggactcgtggaaagacgactatcacagccgctagcttcattgatgtcatcatcacacgg
cagatagcctctgacaaagactcacgagagcgaggctctcagagctctgattcttctagc
agcttgtcatctaatcgatacgacagtaccggtggaggagccattgaggtgatcagccct
gctagttcccctgtccaactccaacaggacaaaccagaggatgggcaacaacaggcaaca
gctggcatgcgggcctacgacatgagtcgttaccgaccatcagtggacccaccacagccc
ccctcctcccaggcagacagctactctcaggtccccaagactcaccgggtcatgaccttg
gcagaccacatttcgcatatcataacccaggactttgcccggaatcaggaccccactccg
gtctcctcctcagcttctgccacattccagagcatggtaccaacagtgtcctcttcaagt
cgagccaaggtgcccagccgctacagtcctgagagccaggtccaggccctacaccaccag
agaccttccagtagagtttcaccagagaatgcccctgacaagtccagagccaggcctggt
aagtctccagaccgaggaggcagacagatggagaactatgaacccatctctccgccacag
agctaccaaggcatggacaaacaggaggctggcgggcctccaccccagaggcgagaagct
gacaactccgagatcaggagcgactccaggtccccggggaatgtcagctatctgcccgct
ttcttcaccaagctggagaacacctcgccaatggtgaaatccaagaagcaggagatcttt
cgtaagttgaactccacctctggtgttggtgattctgatgctggaaacgcgcaaccaggc
acagagatttttaacttgccggctgttacaagctccagcagcatcaaccccaggaatcac
tcctttaatgatccagccagtaacctgggcctggaggatatcattcgcaaggctttgatg
ggcaacttggaggagagacaggaggagcaccagggaggagtaggtgccatcaacaacaca
cctggcgcaggcggtgatggccgccaggaagccaacccatcacccagtatggggaagcag
aagcagggcaaagccaacagccgcaaatccaagtcacctaacctgggtcaggcttatgct
ggaggggagcgtccctcttcagtgtcctccgtccactcagagggagattatcacagacaa
gcccaagcccaacccacatggagttgggatgaccgaccctcatccacaggatccatgcag
ttcccttacaacccgctgatcatgctaaacaacacgccaccaacatccatagcctccccc
tccatacagagccagcagcaacagccacctccatctggagccccggtggcccagcagcgc
gtgtggcagtctctgctgtcggagcaatacgagaccctgtctgacagcgatgactga
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integrated database retrieval system
