Lates calcarifer (barramundi perch): 108893221
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Entry
108893221 CDS
T04895
Name
(RefSeq) polyubiquitin-B
KO
K08770
ubiquitin C
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03320
PPAR signaling pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04137
Mitophagy - animal
lcf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108893221
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108893221
04137 Mitophagy - animal
108893221
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
108893221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108893221
Ubiquitin system [BR:
lcf04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
108893221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Rad60-SLD
Ubiquitin_2
DUF2604
Rad60-SLD_2
TBK1_ULD
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
108893221
NCBI-ProteinID:
XP_018546614
UniProt:
A0AAJ7Q4S2
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Position
LG20:complement(8744711..8752341)
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AA seq
818 aa
AA seq
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MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE
NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGQLNVAQVN
QPNWELFSIAEEYRSMTWSIINHPVPLTTVVRGVVTRKRDQILKSDFADMQIFVKTLTGK
TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL
RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT
LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGQ
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgcagatctttgtgaaaaccctcactggcaagaccatcacccttgaggttgagcccagc
gataccattgagaacgtgaaagccaagatccaggacaaggaaggcattcccccagaccag
cagaggctgatctttgccggcaagcagctggaagatggccgcaccctctctgactacaac
atccagaaggagtccaccctccatcttgtcctgcgtctgaggggtggtatgcagatcttt
gtcaagaccctcacaggcaagaccatcacccttgaggttgagccaagcgacaccattgag
aatgtcaaggccaagatccaggacaaggaaggcattcccccagaccagcagaggctgatc
tttgctggcaagcagctggaagatggccgcaccctctctgactacaatatccagaaggag
tccaccctccatcttgtcctgcgtctgaggggtggcatgcagatctttgtgaaaaccctc
acaggcaagaccatcaccctggaggtcgagccaagcgataccattgagaatgtcaaggcc
aagatccaggacaaggaaggcattcccccagaccagcagaggttgatctttgccggcaag
cagctggaagatggccgcaccctctctgactacaacatccagaaggagtccaccctccat
cttgtcctgcgtctgaggggcggtatgcagatcttcgtcaagaccctcactggcaagacc
atcaccctggaggtcgagccaagcgacaccattgagaatgtcaaggccaagatccaggac
aaggaaggcattcccccagaccagcagaggctgatctttgctggcaagcagctggaagat
ggccgcaccctctctgactacaacatccagaaggagtccaccctccatctggtcctgcgt
ctgaggggtggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggag
gttgagccaagcgacaccattgagaacgtgaaggccaagatccaggacaaggaaggcatt
cccccagaccagcagaggctgatctttgctggcaagcagctggaagatggccgcaccctc
tctgactacaacatccagaaggagtccaccctccatctggtcctgcgtctgaggggtggc
atgcagatctttgtcaagacccttactggcaagaccatcaccctggaggttgaacccagt
gacaccattgagaatgtcaaggccaagatccaggacaaggaaggcattcccccagaccag
cagaggctgatctttgccggcaagcagctggaagatggccgcaccctctctgactacaac
atccagaaggagtccaccctccatcttgtcctgcgtctgaggggtggtatgcagatcttt
gtcaaaaccctcactggcaagaccatcaccctggaggttgagccaagcgacaccattgag
aatgtcaaggccaagatccaggacaaggaaggcattcccccagaccagcagaggctgatc
tttgctggcaagcagctggaagatggccgcaccctctctgactacaacatccagaaggag
tccaccctccatcttgtcctgcgtctgaggggtgggcagctaaatgtggcacaagtaaac
caaccaaactgggaactattttcgattgcggaagaatatcggtcgatgacgtggtccatt
ataaatcatcctgtccccttgacaacagtagtccgaggtgttgtcaccaggaagcgggac
caaatactgaaaagtgactttgcagacatgcagatctttgtcaagaccctcactggcaag
accatcacccttgaggttgagccaagtgacaccatcgagaatgtcaaggcaaagatccag
gacaaggaaggcattcccccagaccagcagaggctgatctttgctggcaagcagctggaa
gatggccgcaccctctctgactacaacatccagaaggagtccaccctccatctggtcctg
cgtctgaggggcggtatgcagatctttgtcaagacccttacaggcaagaccatcaccctg
gaggttgagccaagtgacaccattgagaacgtgaaagccaagatccaggacaaggaaggc
attcccccagaccagcagaggctgatctttgctggcaagcagctggaagatggccgcacc
ctctctgactacaacatccagaaggagtccaccctccatctggtcctgcgtctgaggggt
ggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggaggttgaaccc
agtgacaccattgagaacgtgaaggccaagatccaggacaaggaaggcattcccccagac
cagcagaggctgatctttgctggcaagcagctggaagatggccgcaccctctctgactac
aacatccagaaggagtccaccctccatctggtcctgcgtctgaggggtggtcaataa
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