Lates calcarifer (barramundi perch): 108893296
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Entry
108893296 CDS
T04895
Name
(RefSeq) F-box only protein 40
KO
K10315
F-box protein 40
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108893296
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108893296
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
F-box_4
zf-TRAF_2
F-box-like
F-box
Sina_ZnF
BUD22
zf-TRAF
Motif
Other DBs
NCBI-GeneID:
108893296
NCBI-ProteinID:
XP_018546724
UniProt:
A0AAJ7Q4N9
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Position
LG20:complement(20007802..20013522)
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AA seq
718 aa
AA seq
DB search
MSHRSRASKVRQHVHCDSCYSRRCRARVEASVCCTVVPCRLLCGAVFHLCKEEDHLLLCP
NVRVPCLNAEYGCPVQLSRSSQAAHLQVCPASVVCCSMEWNRWPANDAHSYPNTELHENL
LREREQGGCLDLAMALKDQDRLFHSMKMKKLFPELIQSVEEEEKEEERMEEERKEKEKQK
KAALEKEAAAKEALAQTWKSFNMFNIDMPEKGDEDEDEIDVDVEYQPVLTQEEREAIARS
AGVDTSLLENYTAWERMFSMEMGGCREAGGAAVAGRGQAKGTGKGLGTLMEEDAADSCMG
ATASNNCKQASSACMATSSSSSPSSSCTRKKKFVYGYLEPMKIITVRTFKVPTSFSARQS
RIRNPGFYKRENQAVDTSDLGVAQEEMPVWEEVQASLLCSLEKEQRGHLIAESICTDGLL
QDEGTQTYSFLSAPFRRNTSLADLTAGKPLELHLQLQVESVTSRHHKASSAFTFLCGHTF
QRREYGKHYKNIHSDIQMGVNGWFEQRCPLAYLGCTYIQKRFQPSTHEASVTYNEDLGCF
SLHPTIPVSLGEAAQPSRSSADSSTAQRRRGGRARGGEDSLSSLPYEVLCHMASFLDSLS
LSQLALVSQLMRQVCSSLLQERGMVTLHWERKTYSHGRAKWRVKHKVWQFSNLFSPVDTW
CFQDVLPISEHLKVCPHYERESRTEKIHLPRIRDEDQTNTGCKGPTLVSLFQQKRIMM
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatcgttctcgagcctccaaggtgcgacagcatgtccactgtgattcctgctac
agccggcgctgcagggctcgggtggaggcctctgtgtgctgcacggtcgtcccctgccga
ctgctctgtggagcagtcttccacctgtgcaaagaggaggaccacctgctgctctgccca
aacgtgagggtaccttgccttaatgctgaatatggctgcccggtccagctgtcccgctcc
tcgcaggctgctcacctccaggtgtgtccggccagcgtggtgtgctgctccatggagtgg
aaccgctggcctgccaacgacgcccattcttacccaaacacagagctgcatgaaaacctg
ctcagagaaagggagcagggaggatgtctggacctggccatggccctgaaagaccaggac
cgcctgtttcattccatgaagatgaagaagctgttccctgagctgatccagagtgtggag
gaggaggagaaagaggaagagaggatggaggaggaaaggaaggagaaggagaagcagaaa
aaggccgccttggagaaggaagcagcagcaaaggaagcccttgctcagacatggaagtct
tttaacatgtttaacattgatatgcctgaaaagggggatgaggatgaagatgagattgat
gttgatgttgaatatcagccggtgctgactcaggaggagagagaggctattgccaggtcc
gcaggagtggatactagtctgttagaaaactacactgcctgggagcgcatgttcagtatg
gagatgggcggctgcagggaggctggaggtgcagctgtggcaggcagaggccaggctaaa
ggaactggaaaaggcctgggcactctgatggaggaagatgcagcagattcttgtatgggt
gcaacagcatcaaacaactgcaaacaggcgagcagtgcatgcatggccacatcttcctcc
tcctccccctcctcctcttgcaccaggaagaagaaattcgtgtacggatatttggagcca
atgaagattatcactgtgcgaacgtttaaagtcccaaccagcttctctgccaggcaaagc
cgcatccgcaaccctggtttctacaagagagagaatcaagctgtggataccagtgacctg
ggggtggcacaagaggagatgccagtgtgggaggaagttcaggcctctctgctgtgctcc
ctggagaaggagcagaggggtcaccttattgcagagagcatatgcacagacggtctgtta
caagatgaaggcacacagacttatagcttcctgtccgctcccttccggagaaacacctcg
ctggctgatctgactgctggaaaaccactggagctgcaccttcagctgcaggtggagagc
gtcaccagccgacaccacaaggccagctccgccttcacctttctctgtggacacacattc
cagcgcagagaatatggaaaacattataagaacatccacagtgacattcagatgggtgtg
aatggttggttcgagcagagatgccctctggcgtacctgggctgcacctacatccagaag
aggtttcagccctccacacatgaagccagcgtcacctacaacgaggatctgggctgcttt
agcctgcatcccaccatcccagtctctctgggtgaagccgcccagccgtccaggagctct
gcggactcctccactgctcagagaaggagagggggtcgagcaagaggaggggaggactct
ctgagttcgctgccctacgaggtgctgtgccacatggccagtttcctggacagcctgtcc
ctatcccagctggctctggtgtcccagctcatgaggcaggtgtgctcctccctgctgcag
gagagagggatggtcacccttcactgggagaggaagacctactctcatggaagagccaag
tggagggtgaagcacaaggtgtggcagttcagcaacttgttctctcctgtggacacttgg
tgcttccaagacgtgctgcccatttcagagcatctaaaggtgtgtccccactacgagagg
gagtccagaacagagaagattcacctgccacggatcagagatgaagaccaaaccaacaca
ggctgcaaaggtcccactctggttagcttgttccagcagaagaggatcatgatgtga
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