Lates calcarifer (barramundi perch): 108893331
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Entry
108893331 CDS
T04895
Name
(RefSeq) vacuolar protein-sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108893331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108893331
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108893331
Membrane trafficking [BR:
lcf04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
108893331
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108893331
Exosomal proteins of colorectal cancer cells
108893331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Xre-like-HTH
TssO
MA3
Motif
Other DBs
NCBI-GeneID:
108893331
NCBI-ProteinID:
XP_018546808
UniProt:
A0AAJ7VCI1
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Position
LG20:15133334..15137896
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AA seq
382 aa
AA seq
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MDRFSWSNGLLEINETLVIQQRGVRLYDGDDKAKLDVGVALLSTHRLIWRDIKNHECCVA
MPLSQIIFFEEQAAGIGKSAKIVIHLHPAPANKEPGPYQHSKYPYIKLSFKEHGQIEFYR
RLTEEMTQKRWESTPVSQSIPTGTGPQAGKIRAVGIVGIERKIEEKRKETDKNISEAFED
LSKLMVKAKEMVELSRSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETHGSGTH
YHMQLAKQLGDMLQAPLEERGGMMALTEVYCLVNRARGMELLSPEDLVNACKMFESLKLP
LRLRVFDSGVMVVQLQSHSEEEMIASALDNVSEKGSLTAEEFAKLLGLSVLLSKERLLLA
EKMGHLCRDDSVEGLRFYPNLF
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcttttcgtggtcaaatgggcttttagaaataaatgaaactttagtaatccag
cagcggggggtgaggctgtatgacggtgatgataaggcgaagctggatgttggagttgcc
ttgttgagcacccatcggttgatctggagggacattaaaaatcatgaatgctgcgtagcc
atgcccctgtcacagatcatcttctttgaggagcaggctgcaggaataggaaagagtgca
aaaatagtcattcacctgcatccagcacctgccaacaaggagccaggtccctaccaacac
agcaagtacccctacatcaagctgtccttcaaagaacatggacagattgagttttacagg
aggctaacagaagaaatgactcagaagagatgggagagtacacctgtttcacaatccatc
cccacaggaactggccctcaggcaggaaagatacgtgcagtggggattgttggcatcgag
aggaagatagaggagaagaggaaagaaacagacaaaaacatttcagaggccttcgaagac
ctcagtaagctgatggtgaaggccaaagagatggtggagctgtccagatctatagccaac
aaaatcaaagacaagcagggagacataacagaggatgagacaatccggttcaagtcctac
ctcctgagcatgggtatagctaaccctgtaaccagggaaacgcatggatcgggcacacat
taccacatgcagctggccaagcaactgggagatatgctccaggcccctctagaggagcgt
gggggaatgatggctctcactgaggtgtactgtctcgtcaaccgtgccagagggatggag
ctgttatctccagaggatttggtaaacgcatgcaagatgtttgagtcattgaagctccca
ctgaggctgcgtgtgtttgacagcggtgtgatggtggtccagctgcagtctcacagcgaa
gaggaaatgatagcctcggcactggacaacgtgtcagagaaaggctccctgacagcagag
gagtttgcaaagctcttgggtctctctgttcttctgtctaaagagcggttgctgctggct
gagaagatgggccacctgtgtagagacgactctgttgagggtttgagattctacccaaac
ctcttctga
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